Experiment: Butanol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0317 and PP_0318 are separated by 266 nucleotides PP_0318 and PP_0319 overlap by 4 nucleotides PP_0319 and PP_0320 are separated by 182 nucleotides
PP_0317: PP_0317 - Methyl-accepting chemotaxis transducer, at 380,919 to 382,544
_0317
PP_0318: PP_0318 - conserved protein of unknown function, at 382,811 to 383,041
_0318
PP_0319: PP_0319 - conserved protein of unknown function, at 383,038 to 383,340
_0319
PP_0320: PP_0320 - Methyl-accepting chemotaxis transducer, at 383,523 to 385,460
_0320
Position (kb) 383
384 Strain fitness (log2 ratio) -2
-1
0
1
2 at 382.044 kb on + strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.172 kb on - strand, within PP_0317 at 382.241 kb on - strand, within PP_0317 at 382.287 kb on - strand, within PP_0317 at 382.356 kb on + strand, within PP_0317 at 382.357 kb on - strand, within PP_0317 at 382.439 kb on + strand at 382.440 kb on - strand at 382.440 kb on - strand at 382.440 kb on - strand at 382.464 kb on - strand at 382.464 kb on - strand at 382.523 kb on + strand at 382.704 kb on - strand at 382.732 kb on + strand at 382.733 kb on - strand at 382.747 kb on + strand at 382.747 kb on + strand at 382.756 kb on + strand at 382.804 kb on + strand at 382.805 kb on - strand at 383.223 kb on + strand, within PP_0319 at 383.224 kb on - strand, within PP_0319 at 383.338 kb on + strand at 383.339 kb on - strand at 383.463 kb on + strand at 383.502 kb on + strand at 383.503 kb on - strand at 383.503 kb on - strand at 383.516 kb on + strand at 383.516 kb on + strand at 383.516 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.537 kb on + strand at 383.538 kb on - strand at 383.609 kb on + strand at 383.748 kb on - strand, within PP_0320 at 383.814 kb on + strand, within PP_0320 at 383.849 kb on + strand, within PP_0320 at 383.849 kb on + strand, within PP_0320 at 383.849 kb on + strand, within PP_0320 at 383.850 kb on - strand, within PP_0320 at 383.852 kb on + strand, within PP_0320 at 383.852 kb on + strand, within PP_0320 at 383.853 kb on - strand, within PP_0320 at 383.883 kb on + strand, within PP_0320 at 383.883 kb on + strand, within PP_0320 at 383.884 kb on - strand, within PP_0320 at 383.884 kb on - strand, within PP_0320 at 383.886 kb on + strand, within PP_0320 at 383.886 kb on + strand, within PP_0320 at 383.886 kb on + strand, within PP_0320 at 383.887 kb on - strand, within PP_0320 at 383.946 kb on + strand, within PP_0320 at 383.946 kb on + strand, within PP_0320 at 383.947 kb on - strand, within PP_0320 at 384.031 kb on - strand, within PP_0320 at 384.095 kb on - strand, within PP_0320 at 384.269 kb on + strand, within PP_0320 at 384.269 kb on + strand, within PP_0320 at 384.270 kb on - strand, within PP_0320 at 384.301 kb on - strand, within PP_0320
Per-strain Table
Position Strand Gene LocusTag Fraction Butanol 0.6 vol% remove 382,044 + PP_0317 0.69 +0.9 382,045 - PP_0317 0.69 +0.6 382,045 - PP_0317 0.69 +2.0 382,045 - PP_0317 0.69 -0.9 382,172 - PP_0317 0.77 -0.6 382,241 - PP_0317 0.81 +0.4 382,287 - PP_0317 0.84 -0.2 382,356 + PP_0317 0.88 +0.9 382,357 - PP_0317 0.88 -0.2 382,439 + -2.1 382,440 - -0.2 382,440 - -0.9 382,440 - -0.3 382,464 - +0.9 382,464 - -0.6 382,523 + -0.3 382,704 - +0.5 382,732 + +0.1 382,733 - +0.0 382,747 + -0.0 382,747 + +0.9 382,756 + -1.1 382,804 + +0.8 382,805 - -1.3 383,223 + PP_0319 0.61 -0.3 383,224 - PP_0319 0.61 -1.1 383,338 + -0.1 383,339 - +0.4 383,463 + +1.1 383,502 + +1.3 383,503 - -0.5 383,503 - -1.0 383,516 + +1.1 383,516 + -0.8 383,516 + -0.7 383,528 + -1.2 383,528 + -0.1 383,528 + -2.4 383,528 + +0.4 383,528 + +0.7 383,528 + +0.2 383,528 + -0.7 383,529 - -0.9 383,529 - -2.5 383,529 - -0.3 383,529 - -0.2 383,529 - +0.6 383,537 + -0.9 383,538 - -0.2 383,609 + +0.5 383,748 - PP_0320 0.12 +0.9 383,814 + PP_0320 0.15 +0.4 383,849 + PP_0320 0.17 +1.0 383,849 + PP_0320 0.17 -0.3 383,849 + PP_0320 0.17 +0.3 383,850 - PP_0320 0.17 +0.5 383,852 + PP_0320 0.17 +0.4 383,852 + PP_0320 0.17 +0.5 383,853 - PP_0320 0.17 +0.4 383,883 + PP_0320 0.19 -1.0 383,883 + PP_0320 0.19 -0.2 383,884 - PP_0320 0.19 +1.4 383,884 - PP_0320 0.19 -0.3 383,886 + PP_0320 0.19 -0.1 383,886 + PP_0320 0.19 +0.8 383,886 + PP_0320 0.19 +0.5 383,887 - PP_0320 0.19 +1.0 383,946 + PP_0320 0.22 +0.5 383,946 + PP_0320 0.22 +1.1 383,947 - PP_0320 0.22 +0.7 384,031 - PP_0320 0.26 -0.3 384,095 - PP_0320 0.30 +0.7 384,269 + PP_0320 0.38 -0.1 384,269 + PP_0320 0.38 +1.3 384,270 - PP_0320 0.39 +0.3 384,301 - PP_0320 0.40 -0.1
Or see this region's nucleotide sequence