Strain Fitness in Pseudomonas putida KT2440 around PP_0065

Experiment: Butanol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Butanol 0.6 vol%
73,858	-		PP_0063	0.38	-1.9
73,915	+		PP_0063	0.44	-0.1
73,915	+		PP_0063	0.44	+0.7
73,915	+		PP_0063	0.44	+1.1
73,915	+		PP_0063	0.44	+1.9
73,916	-		PP_0063	0.44	+2.4
74,082	+		PP_0063	0.63	+0.1
74,195	+		PP_0063	0.75	-2.4
74,196	-		PP_0063	0.76	-0.9
74,275	+		PP_0063	0.84	+1.4
74,275	+		PP_0063	0.84	-1.5
74,275	+		PP_0063	0.84	-1.7
74,276	-		PP_0063	0.85	-2.2
74,276	-		PP_0063	0.85	-1.1
74,276	-		PP_0063	0.85	-0.3
74,276	-		PP_0063	0.85	+1.1
74,276	-		PP_0063	0.85	-1.8
74,329	+				-1.5
74,330	-				-1.1
74,330	-				+0.7
74,330	-				+0.5
74,330	-				+0.7
74,341	+				-1.3
74,353	+				-1.3
74,353	+				+1.1
74,354	-				-0.8
74,354	-				-0.9
74,354	-				-2.0
74,410	+				-1.1
74,410	+				+0.4
74,411	-				+0.9
74,411	-				-1.4
74,411	-				-0.5
74,411	-				+0.8
74,411	-				+0.7
74,411	-				+0.3
74,431	+				+1.7
74,431	+				+0.6
74,431	+				+0.9
74,431	+				+0.2
74,431	+				+1.0
74,497	+				-0.0
74,497	+				-1.4
74,498	-				+0.2
74,646	+		PP_0064	0.43	-1.2
74,647	-		PP_0064	0.43	+0.5
74,647	-		PP_0064	0.43	+1.3
74,647	-		PP_0064	0.43	-0.9
74,654	-		PP_0064	0.46	-0.1
74,679	+		PP_0064	0.54	+0.8
74,680	-		PP_0064	0.54	+1.1
74,696	+		PP_0064	0.59	-2.4
74,985	+		PP_0065	0.11	-1.8
75,196	+		PP_0065	0.26	-0.1
75,196	+		PP_0065	0.26	-1.0
75,209	+		PP_0065	0.27	-0.7
75,431	+		PP_0065	0.43	-0.7
75,517	-		PP_0065	0.50	-1.5
75,728	+		PP_0065	0.65	+1.1
75,729	-		PP_0065	0.65	-0.3
75,729	-		PP_0065	0.65	-1.5
75,732	-				-0.3
75,818	+		PP_0065	0.71	-1.3
75,818	+		PP_0065	0.71	-0.7
75,818	+		PP_0065	0.71	-1.3
75,818	+		PP_0065	0.71	-1.5
75,819	-		PP_0065	0.72	-0.9
76,131	+				-1.1
76,131	+				-0.9
76,222	-				+1.1
76,234	+				+1.3
76,235	-				-1.7
76,270	+				-1.3
76,271	-				-0.6
76,271	-				-1.1
76,273	+				-1.0
76,273	+				-0.0
76,273	+				-1.7
76,273	+				-0.1
76,274	-				-0.1
76,274	-				+0.3
76,435	+		PP_0066	0.15	+0.6
76,435	+		PP_0066	0.15	-0.3
76,435	+		PP_0066	0.15	-2.3
76,436	-		PP_0066	0.15	-1.0
76,436	-		PP_0066	0.15	-0.7
76,436	-		PP_0066	0.15	+0.4
76,436	-		PP_0066	0.15	-2.5
76,437	+		PP_0066	0.16	-2.2
76,437	+		PP_0066	0.16	-0.6
76,437	+		PP_0066	0.16	+0.7
76,438	-		PP_0066	0.16	-0.0
76,438	-		PP_0066	0.16	+0.3
76,438	-		PP_0066	0.16	-1.6
76,942	+		PP_0066	0.54	-0.9
76,942	+		PP_0066	0.54	-2.3
76,990	+		PP_0066	0.58	-1.3
76,991	-		PP_0066	0.58	-1.3
76,991	-		PP_0066	0.58	+0.7
76,991	-		PP_0066	0.58	+0.6