Strain Fitness in Pseudomonas putida KT2440 around PP_0057

Experiment: Butanol 0.6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0056 and PP_0057 are separated by 97 nucleotidesPP_0057 and PP_0058 are separated by 174 nucleotides PP_0056: PP_0056 - choline dehydrogenase, at 64,943 to 66,595 _0056 PP_0057: PP_0057 - major facilitator family transporter, at 66,693 to 68,312 _0057 PP_0058: PP_0058 - putative 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 68,487 to 69,272 _0058 Position (kb) 66 67 68 69Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 65.724 kb on + strand, within PP_0056at 65.788 kb on + strand, within PP_0056at 65.859 kb on - strand, within PP_0056at 65.880 kb on - strand, within PP_0056at 65.933 kb on + strand, within PP_0056at 65.934 kb on - strand, within PP_0056at 65.939 kb on + strand, within PP_0056at 65.940 kb on - strand, within PP_0056at 65.940 kb on - strand, within PP_0056at 65.979 kb on + strand, within PP_0056at 65.980 kb on - strand, within PP_0056at 66.029 kb on + strand, within PP_0056at 66.091 kb on + strand, within PP_0056at 66.091 kb on + strand, within PP_0056at 66.092 kb on - strand, within PP_0056at 66.092 kb on - strand, within PP_0056at 66.092 kb on - strand, within PP_0056at 66.186 kb on - strand, within PP_0056at 66.186 kb on - strand, within PP_0056at 66.186 kb on - strand, within PP_0056at 66.186 kb on - strand, within PP_0056at 66.287 kb on + strand, within PP_0056at 66.287 kb on + strand, within PP_0056at 66.287 kb on + strand, within PP_0056at 66.288 kb on - strand, within PP_0056at 66.288 kb on - strand, within PP_0056at 66.374 kb on - strand, within PP_0056at 66.444 kb on + strandat 66.444 kb on + strandat 66.444 kb on + strandat 66.445 kb on - strandat 66.445 kb on - strandat 66.450 kb on + strandat 66.450 kb on + strandat 66.477 kb on + strandat 66.478 kb on - strandat 66.490 kb on + strandat 66.490 kb on + strandat 66.490 kb on + strandat 66.491 kb on - strandat 66.491 kb on - strandat 66.491 kb on - strandat 66.491 kb on - strandat 66.491 kb on - strandat 66.563 kb on + strandat 66.659 kb on - strandat 66.659 kb on - strandat 66.702 kb on + strandat 66.702 kb on + strandat 66.702 kb on + strandat 66.702 kb on + strandat 66.703 kb on - strandat 66.703 kb on - strandat 66.703 kb on - strandat 66.732 kb on - strandat 66.813 kb on + strandat 66.813 kb on + strandat 66.814 kb on - strandat 66.814 kb on - strandat 66.814 kb on - strandat 66.814 kb on - strandat 66.814 kb on - strandat 66.867 kb on - strand, within PP_0057at 67.038 kb on + strand, within PP_0057at 67.039 kb on - strand, within PP_0057at 67.134 kb on + strand, within PP_0057at 67.134 kb on + strand, within PP_0057at 67.134 kb on + strand, within PP_0057at 67.135 kb on - strand, within PP_0057at 67.135 kb on - strand, within PP_0057at 67.135 kb on - strand, within PP_0057at 67.245 kb on + strand, within PP_0057at 67.245 kb on + strand, within PP_0057at 67.246 kb on - strand, within PP_0057at 67.247 kb on + strand, within PP_0057at 67.247 kb on + strand, within PP_0057at 67.247 kb on + strand, within PP_0057at 67.247 kb on + strand, within PP_0057at 67.247 kb on + strand, within PP_0057at 67.248 kb on - strand, within PP_0057at 67.248 kb on - strand, within PP_0057at 67.446 kb on - strand, within PP_0057at 67.488 kb on + strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.489 kb on - strand, within PP_0057at 67.503 kb on + strand, within PP_0057at 67.503 kb on + strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.504 kb on - strand, within PP_0057at 67.625 kb on + strand, within PP_0057at 67.672 kb on + strand, within PP_0057at 67.672 kb on + strand, within PP_0057at 67.673 kb on - strand, within PP_0057at 67.677 kb on + strand, within PP_0057at 67.677 kb on + strand, within PP_0057at 67.677 kb on + strand, within PP_0057at 67.677 kb on + strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.678 kb on - strand, within PP_0057at 67.708 kb on - strand, within PP_0057at 67.877 kb on + strand, within PP_0057at 67.897 kb on - strand, within PP_0057at 68.011 kb on + strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.012 kb on - strand, within PP_0057at 68.023 kb on + strand, within PP_0057at 68.024 kb on - strand, within PP_0057at 68.061 kb on + strand, within PP_0057at 68.061 kb on + strand, within PP_0057at 68.061 kb on + strand, within PP_0057at 68.062 kb on - strand, within PP_0057at 68.062 kb on - strand, within PP_0057at 68.062 kb on - strand, within PP_0057at 68.062 kb on - strand, within PP_0057at 68.112 kb on + strand, within PP_0057at 68.112 kb on + strand, within PP_0057at 68.113 kb on - strand, within PP_0057at 68.113 kb on - strand, within PP_0057at 68.134 kb on - strand, within PP_0057at 68.144 kb on + strand, within PP_0057at 68.144 kb on + strand, within PP_0057at 68.171 kb on + strandat 68.196 kb on + strandat 68.197 kb on - strandat 68.198 kb on + strandat 68.208 kb on - strandat 68.214 kb on + strandat 68.215 kb on - strandat 68.293 kb on + strandat 68.294 kb on - strandat 68.294 kb on - strandat 68.297 kb on + strandat 68.298 kb on - strandat 68.298 kb on - strandat 68.326 kb on + strandat 68.327 kb on - strandat 68.342 kb on - strandat 68.617 kb on + strand, within PP_0058at 68.618 kb on - strand, within PP_0058at 68.634 kb on + strand, within PP_0058at 68.634 kb on + strand, within PP_0058at 68.781 kb on + strand, within PP_0058at 68.859 kb on + strand, within PP_0058at 68.931 kb on + strand, within PP_0058at 68.931 kb on + strand, within PP_0058at 68.932 kb on - strand, within PP_0058at 68.932 kb on - strand, within PP_0058at 68.932 kb on - strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.935 kb on + strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.936 kb on - strand, within PP_0058at 68.964 kb on - strand, within PP_0058at 68.977 kb on + strand, within PP_0058at 69.071 kb on - strand, within PP_0058at 69.071 kb on - strand, within PP_0058at 69.121 kb on + strand, within PP_0058at 69.122 kb on - strand, within PP_0058at 69.139 kb on + strand, within PP_0058at 69.140 kb on - strand, within PP_0058at 69.220 kb on + strandat 69.258 kb on - strandat 69.258 kb on - strandat 69.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Butanol 0.6 vol%
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65,724 + PP_0056 0.47 +2.3
65,788 + PP_0056 0.51 +0.6
65,859 - PP_0056 0.55 +0.5
65,880 - PP_0056 0.57 +0.1
65,933 + PP_0056 0.60 +1.0
65,934 - PP_0056 0.60 +0.5
65,939 + PP_0056 0.60 +0.7
65,940 - PP_0056 0.60 -0.6
65,940 - PP_0056 0.60 +0.6
65,979 + PP_0056 0.63 -0.1
65,980 - PP_0056 0.63 +0.5
66,029 + PP_0056 0.66 -0.4
66,091 + PP_0056 0.69 +1.7
66,091 + PP_0056 0.69 -0.4
66,092 - PP_0056 0.70 -1.8
66,092 - PP_0056 0.70 -1.9
66,092 - PP_0056 0.70 -0.4
66,186 - PP_0056 0.75 +1.5
66,186 - PP_0056 0.75 +0.1
66,186 - PP_0056 0.75 -0.8
66,186 - PP_0056 0.75 +0.6
66,287 + PP_0056 0.81 -0.4
66,287 + PP_0056 0.81 +0.3
66,287 + PP_0056 0.81 +0.3
66,288 - PP_0056 0.81 -0.0
66,288 - PP_0056 0.81 -0.5
66,374 - PP_0056 0.87 -0.6
66,444 + -0.1
66,444 + +0.0
66,444 + -1.2
66,445 - -0.4
66,445 - +0.6
66,450 + +0.4
66,450 + -1.8
66,477 + -0.5
66,478 - -0.2
66,490 + -1.0
66,490 + -0.1
66,490 + -0.4
66,491 - +0.4
66,491 - +0.4
66,491 - -0.3
66,491 - +0.3
66,491 - +0.3
66,563 + +0.9
66,659 - +0.7
66,659 - +0.2
66,702 + -1.7
66,702 + +0.5
66,702 + -0.6
66,702 + -1.3
66,703 - -0.5
66,703 - +0.3
66,703 - -1.9
66,732 - -0.9
66,813 + +1.2
66,813 + +1.2
66,814 - -0.3
66,814 - -1.4
66,814 - -1.1
66,814 - +0.5
66,814 - +0.8
66,867 - PP_0057 0.11 +0.8
67,038 + PP_0057 0.21 +0.5
67,039 - PP_0057 0.21 -0.5
67,134 + PP_0057 0.27 -1.4
67,134 + PP_0057 0.27 +0.0
67,134 + PP_0057 0.27 +0.1
67,135 - PP_0057 0.27 +0.5
67,135 - PP_0057 0.27 +0.4
67,135 - PP_0057 0.27 -1.3
67,245 + PP_0057 0.34 -0.7
67,245 + PP_0057 0.34 +1.0
67,246 - PP_0057 0.34 +0.1
67,247 + PP_0057 0.34 +0.8
67,247 + PP_0057 0.34 -0.1
67,247 + PP_0057 0.34 +0.1
67,247 + PP_0057 0.34 -0.6
67,247 + PP_0057 0.34 +0.6
67,248 - PP_0057 0.34 +0.2
67,248 - PP_0057 0.34 +0.3
67,446 - PP_0057 0.46 -0.7
67,488 + PP_0057 0.49 +0.2
67,489 - PP_0057 0.49 -1.0
67,489 - PP_0057 0.49 +2.1
67,489 - PP_0057 0.49 +0.5
67,489 - PP_0057 0.49 -1.5
67,503 + PP_0057 0.50 +2.2
67,503 + PP_0057 0.50 +0.2
67,504 - PP_0057 0.50 -0.5
67,504 - PP_0057 0.50 +2.0
67,504 - PP_0057 0.50 -0.2
67,504 - PP_0057 0.50 +0.7
67,504 - PP_0057 0.50 +0.6
67,625 + PP_0057 0.58 +1.4
67,672 + PP_0057 0.60 +0.2
67,672 + PP_0057 0.60 -1.2
67,673 - PP_0057 0.60 +0.4
67,677 + PP_0057 0.61 -0.7
67,677 + PP_0057 0.61 +1.8
67,677 + PP_0057 0.61 -1.4
67,677 + PP_0057 0.61 -0.0
67,678 - PP_0057 0.61 +0.6
67,678 - PP_0057 0.61 -3.8
67,678 - PP_0057 0.61 -0.2
67,678 - PP_0057 0.61 +2.1
67,678 - PP_0057 0.61 -1.2
67,678 - PP_0057 0.61 -0.5
67,678 - PP_0057 0.61 +0.4
67,708 - PP_0057 0.63 +0.6
67,877 + PP_0057 0.73 +1.7
67,897 - PP_0057 0.74 +0.6
68,011 + PP_0057 0.81 +1.7
68,012 - PP_0057 0.81 +0.4
68,012 - PP_0057 0.81 -0.6
68,012 - PP_0057 0.81 -0.3
68,012 - PP_0057 0.81 +0.7
68,012 - PP_0057 0.81 -0.4
68,023 + PP_0057 0.82 +0.1
68,024 - PP_0057 0.82 -0.2
68,061 + PP_0057 0.84 +0.8
68,061 + PP_0057 0.84 +0.1
68,061 + PP_0057 0.84 -0.8
68,062 - PP_0057 0.85 +1.0
68,062 - PP_0057 0.85 +0.7
68,062 - PP_0057 0.85 +0.3
68,062 - PP_0057 0.85 -0.4
68,112 + PP_0057 0.88 -0.1
68,112 + PP_0057 0.88 -0.6
68,113 - PP_0057 0.88 +1.2
68,113 - PP_0057 0.88 +0.3
68,134 - PP_0057 0.89 +0.8
68,144 + PP_0057 0.90 -0.2
68,144 + PP_0057 0.90 +0.8
68,171 + -1.7
68,196 + +1.2
68,197 - -1.1
68,198 + -1.8
68,208 - +0.8
68,214 + -0.3
68,215 - -0.9
68,293 + -0.3
68,294 - -0.3
68,294 - -0.2
68,297 + -0.3
68,298 - +0.3
68,298 - -1.1
68,326 + +1.1
68,327 - -0.2
68,342 - +0.7
68,617 + PP_0058 0.17 +1.8
68,618 - PP_0058 0.17 +0.6
68,634 + PP_0058 0.19 +1.8
68,634 + PP_0058 0.19 +1.7
68,781 + PP_0058 0.37 +1.0
68,859 + PP_0058 0.47 +1.1
68,931 + PP_0058 0.56 +0.8
68,931 + PP_0058 0.56 -0.4
68,932 - PP_0058 0.57 +1.8
68,932 - PP_0058 0.57 +1.9
68,932 - PP_0058 0.57 +1.6
68,935 + PP_0058 0.57 +1.2
68,935 + PP_0058 0.57 +1.5
68,935 + PP_0058 0.57 +1.2
68,935 + PP_0058 0.57 +1.2
68,935 + PP_0058 0.57 +1.2
68,935 + PP_0058 0.57 +1.5
68,935 + PP_0058 0.57 +1.1
68,935 + PP_0058 0.57 +1.5
68,936 - PP_0058 0.57 +1.3
68,936 - PP_0058 0.57 +1.3
68,936 - PP_0058 0.57 +0.9
68,936 - PP_0058 0.57 +1.4
68,936 - PP_0058 0.57 +2.2
68,936 - PP_0058 0.57 +1.7
68,964 - PP_0058 0.61 +2.0
68,977 + PP_0058 0.62 +1.8
69,071 - PP_0058 0.74 +1.5
69,071 - PP_0058 0.74 +1.5
69,121 + PP_0058 0.81 +1.5
69,122 - PP_0058 0.81 +1.3
69,139 + PP_0058 0.83 +0.8
69,140 - PP_0058 0.83 +1.5
69,220 + +1.4
69,258 - +1.7
69,258 - +3.3
69,268 - +1.1

Or see this region's nucleotide sequence