Experiment: Butanol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0021 and PP_0022 are separated by 184 nucleotides PP_0022 and PP_0023 are separated by 445 nucleotides PP_0023 and PP_0024 are separated by 122 nucleotides
PP_0021: PP_0021 - conserved hypothetical protein, at 25,881 to 26,804
_0021
PP_0022: PP_0022 - hypothetical protein, at 26,989 to 27,153
_0022
PP_0023: PP_0023 - conserved hypothetical protein, at 27,599 to 27,727
_0023
PP_0024: PP_0024 - putative membrane-associated metal-dependent hydrolase, at 27,850 to 29,547
_0024
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 25.999 kb on + strand, within PP_0021 at 25.999 kb on + strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.000 kb on - strand, within PP_0021 at 26.015 kb on - strand, within PP_0021 at 26.015 kb on - strand, within PP_0021 at 26.056 kb on - strand, within PP_0021 at 26.062 kb on + strand, within PP_0021 at 26.062 kb on + strand, within PP_0021 at 26.063 kb on - strand, within PP_0021 at 26.063 kb on - strand, within PP_0021 at 26.099 kb on + strand, within PP_0021 at 26.099 kb on + strand, within PP_0021 at 26.099 kb on + strand, within PP_0021 at 26.099 kb on + strand, within PP_0021 at 26.099 kb on + strand, within PP_0021 at 26.100 kb on - strand, within PP_0021 at 26.100 kb on - strand, within PP_0021 at 26.100 kb on - strand, within PP_0021 at 26.102 kb on + strand, within PP_0021 at 26.102 kb on + strand, within PP_0021 at 26.102 kb on + strand, within PP_0021 at 26.102 kb on + strand, within PP_0021 at 26.103 kb on - strand, within PP_0021 at 26.103 kb on - strand, within PP_0021 at 26.103 kb on - strand, within PP_0021 at 26.103 kb on - strand, within PP_0021 at 26.103 kb on - strand, within PP_0021 at 26.132 kb on + strand, within PP_0021 at 26.132 kb on + strand, within PP_0021 at 26.158 kb on - strand, within PP_0021 at 26.233 kb on + strand, within PP_0021 at 26.233 kb on + strand, within PP_0021 at 26.233 kb on + strand, within PP_0021 at 26.233 kb on + strand, within PP_0021 at 26.234 kb on - strand, within PP_0021 at 26.234 kb on - strand, within PP_0021 at 26.262 kb on + strand, within PP_0021 at 26.263 kb on - strand, within PP_0021 at 26.328 kb on + strand, within PP_0021 at 26.328 kb on + strand, within PP_0021 at 26.328 kb on + strand, within PP_0021 at 26.346 kb on + strand, within PP_0021 at 26.346 kb on + strand, within PP_0021 at 26.352 kb on + strand, within PP_0021 at 26.352 kb on + strand, within PP_0021 at 26.352 kb on + strand, within PP_0021 at 26.353 kb on - strand, within PP_0021 at 26.353 kb on - strand, within PP_0021 at 26.355 kb on - strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.394 kb on + strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.395 kb on - strand, within PP_0021 at 26.459 kb on + strand, within PP_0021 at 26.459 kb on + strand, within PP_0021 at 26.459 kb on + strand, within PP_0021 at 26.460 kb on - strand, within PP_0021 at 26.517 kb on + strand, within PP_0021 at 26.542 kb on - strand, within PP_0021 at 26.626 kb on + strand, within PP_0021 at 26.626 kb on + strand, within PP_0021 at 26.627 kb on - strand, within PP_0021 at 26.627 kb on - strand, within PP_0021 at 26.627 kb on - strand, within PP_0021 at 26.733 kb on + strand at 26.734 kb on - strand at 26.747 kb on + strand at 26.747 kb on + strand at 26.818 kb on - strand at 26.837 kb on + strand at 26.838 kb on - strand at 26.851 kb on + strand at 26.851 kb on + strand at 26.851 kb on + strand at 26.852 kb on - strand at 26.871 kb on + strand at 26.878 kb on + strand at 26.879 kb on - strand at 26.879 kb on - strand at 26.882 kb on + strand at 26.882 kb on + strand at 26.883 kb on - strand at 26.955 kb on + strand at 26.955 kb on + strand at 26.956 kb on - strand at 26.956 kb on - strand at 26.956 kb on - strand at 26.956 kb on - strand at 26.956 kb on - strand at 26.956 kb on - strand at 26.956 kb on - strand at 26.990 kb on + strand at 26.990 kb on + strand at 26.990 kb on + strand at 26.990 kb on + strand at 26.991 kb on - strand at 26.992 kb on + strand at 26.993 kb on - strand at 26.993 kb on - strand at 26.993 kb on - strand at 27.091 kb on - strand, within PP_0022 at 27.140 kb on + strand at 27.140 kb on + strand at 27.141 kb on - strand at 27.173 kb on - strand at 27.211 kb on - strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.291 kb on + strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.292 kb on - strand at 27.321 kb on + strand at 27.322 kb on - strand at 27.322 kb on - strand at 27.322 kb on - strand at 27.432 kb on + strand at 27.433 kb on - strand at 27.462 kb on - strand at 27.476 kb on + strand at 27.476 kb on + strand at 27.600 kb on + strand at 27.601 kb on - strand at 27.766 kb on + strand at 27.766 kb on + strand at 27.766 kb on + strand at 27.766 kb on + strand at 27.767 kb on - strand at 27.767 kb on - strand at 27.770 kb on + strand at 27.770 kb on + strand at 27.770 kb on + strand at 27.770 kb on + strand at 27.770 kb on + strand at 27.771 kb on - strand at 27.771 kb on - strand at 27.774 kb on + strand at 27.775 kb on - strand at 27.775 kb on - strand at 27.863 kb on + strand at 27.863 kb on + strand at 27.864 kb on - strand at 27.864 kb on - strand at 27.864 kb on - strand at 27.885 kb on + strand at 27.885 kb on + strand at 27.886 kb on - strand at 27.886 kb on - strand at 27.886 kb on - strand at 27.886 kb on - strand at 27.886 kb on - strand at 27.917 kb on + strand at 28.054 kb on + strand, within PP_0024 at 28.055 kb on - strand, within PP_0024 at 28.055 kb on - strand, within PP_0024 at 28.094 kb on + strand, within PP_0024 at 28.108 kb on + strand, within PP_0024 at 28.108 kb on + strand, within PP_0024 at 28.108 kb on + strand, within PP_0024 at 28.108 kb on + strand, within PP_0024 at 28.109 kb on - strand, within PP_0024 at 28.109 kb on - strand, within PP_0024 at 28.109 kb on - strand, within PP_0024 at 28.112 kb on + strand, within PP_0024 at 28.113 kb on - strand, within PP_0024 at 28.113 kb on - strand, within PP_0024
Per-strain Table
Position Strand Gene LocusTag Fraction Butanol 0.6 vol% remove 25,999 + PP_0021 0.13 +0.1 25,999 + PP_0021 0.13 -0.0 26,000 - PP_0021 0.13 +2.1 26,000 - PP_0021 0.13 -0.5 26,000 - PP_0021 0.13 +1.3 26,000 - PP_0021 0.13 +0.9 26,000 - PP_0021 0.13 +1.0 26,000 - PP_0021 0.13 +0.6 26,000 - PP_0021 0.13 -1.3 26,015 - PP_0021 0.15 +0.2 26,015 - PP_0021 0.15 -0.2 26,056 - PP_0021 0.19 -0.2 26,062 + PP_0021 0.20 -0.1 26,062 + PP_0021 0.20 +1.3 26,063 - PP_0021 0.20 +1.1 26,063 - PP_0021 0.20 +0.2 26,099 + PP_0021 0.24 +0.5 26,099 + PP_0021 0.24 +0.9 26,099 + PP_0021 0.24 -0.2 26,099 + PP_0021 0.24 +0.8 26,099 + PP_0021 0.24 +0.1 26,100 - PP_0021 0.24 -0.4 26,100 - PP_0021 0.24 -2.4 26,100 - PP_0021 0.24 -1.6 26,102 + PP_0021 0.24 -0.5 26,102 + PP_0021 0.24 +1.7 26,102 + PP_0021 0.24 -0.4 26,102 + PP_0021 0.24 +0.0 26,103 - PP_0021 0.24 -0.3 26,103 - PP_0021 0.24 -0.5 26,103 - PP_0021 0.24 -0.8 26,103 - PP_0021 0.24 -1.1 26,103 - PP_0021 0.24 -1.3 26,132 + PP_0021 0.27 +1.1 26,132 + PP_0021 0.27 +1.0 26,158 - PP_0021 0.30 +1.0 26,233 + PP_0021 0.38 +0.7 26,233 + PP_0021 0.38 +1.7 26,233 + PP_0021 0.38 -0.5 26,233 + PP_0021 0.38 -1.3 26,234 - PP_0021 0.38 +0.1 26,234 - PP_0021 0.38 +1.1 26,262 + PP_0021 0.41 -0.5 26,263 - PP_0021 0.41 +0.3 26,328 + PP_0021 0.48 +0.3 26,328 + PP_0021 0.48 +0.0 26,328 + PP_0021 0.48 +1.7 26,346 + PP_0021 0.50 -0.7 26,346 + PP_0021 0.50 +1.6 26,352 + PP_0021 0.51 -0.2 26,352 + PP_0021 0.51 +0.5 26,352 + PP_0021 0.51 +0.5 26,353 - PP_0021 0.51 -0.0 26,353 - PP_0021 0.51 -0.3 26,355 - PP_0021 0.51 +0.1 26,394 + PP_0021 0.56 -0.4 26,394 + PP_0021 0.56 +2.7 26,394 + PP_0021 0.56 -0.7 26,394 + PP_0021 0.56 -1.8 26,394 + PP_0021 0.56 -0.0 26,394 + PP_0021 0.56 -1.5 26,394 + PP_0021 0.56 -0.2 26,394 + PP_0021 0.56 +1.1 26,394 + PP_0021 0.56 -0.1 26,394 + PP_0021 0.56 +0.8 26,394 + PP_0021 0.56 -1.4 26,394 + PP_0021 0.56 +0.5 26,395 - PP_0021 0.56 -0.6 26,395 - PP_0021 0.56 +0.2 26,395 - PP_0021 0.56 -1.1 26,395 - +2.3 26,395 - PP_0021 0.56 -1.2 26,395 - PP_0021 0.56 +0.1 26,395 - PP_0021 0.56 -0.1 26,395 - PP_0021 0.56 +0.2 26,395 - PP_0021 0.56 +0.4 26,459 + PP_0021 0.63 -2.2 26,459 + PP_0021 0.63 -1.7 26,459 + PP_0021 0.63 -0.0 26,460 - PP_0021 0.63 -2.0 26,517 + PP_0021 0.69 +0.3 26,542 - PP_0021 0.72 -0.4 26,626 + PP_0021 0.81 -0.2 26,626 + PP_0021 0.81 -1.7 26,627 - PP_0021 0.81 -1.2 26,627 - PP_0021 0.81 +2.0 26,627 - PP_0021 0.81 +0.3 26,733 + +0.3 26,734 - -2.1 26,747 + +0.7 26,747 + +0.8 26,818 - +1.3 26,837 + +0.6 26,838 - +0.4 26,851 + -0.5 26,851 + +1.2 26,851 + +0.3 26,852 - +1.2 26,871 + -0.3 26,878 + -1.7 26,879 - -0.4 26,879 - +0.2 26,882 + +1.5 26,882 + +0.1 26,883 - +1.2 26,955 + +0.5 26,955 + +0.1 26,956 - +0.3 26,956 - +0.8 26,956 - +0.1 26,956 - -0.8 26,956 - +0.9 26,956 - +0.4 26,956 - -0.1 26,990 + +0.6 26,990 + +0.7 26,990 + +0.3 26,990 + +0.2 26,991 - +0.1 26,992 + +0.0 26,993 - -1.7 26,993 - +0.3 26,993 - -0.7 27,091 - PP_0022 0.62 -0.6 27,140 + -0.1 27,140 + +0.4 27,141 - -2.2 27,173 - +0.3 27,211 - -0.1 27,291 + -0.1 27,291 + -1.7 27,291 + -0.4 27,291 + +1.0 27,291 + +1.2 27,291 + +0.3 27,291 + -0.5 27,291 + -0.2 27,291 + +0.7 27,292 - +0.6 27,292 - +0.5 27,292 - -2.9 27,292 - +0.8 27,292 - +0.1 27,292 - -0.6 27,292 - +0.6 27,292 - -0.3 27,292 - -1.1 27,292 - -1.5 27,292 - +0.6 27,292 - +2.7 27,292 - -0.1 27,292 - +1.2 27,292 - -2.8 27,321 + +0.2 27,322 - -1.3 27,322 - -0.7 27,322 - +0.5 27,432 + -0.3 27,433 - +1.0 27,462 - -2.3 27,476 + -0.9 27,476 + -1.4 27,600 + +0.9 27,601 - +0.6 27,766 + +0.3 27,766 + +1.4 27,766 + +0.8 27,766 + -0.4 27,767 - -0.6 27,767 - +1.6 27,770 + +1.2 27,770 + -2.8 27,770 + +0.3 27,770 + -0.0 27,770 + +0.6 27,771 - -0.4 27,771 - +0.5 27,774 + -0.1 27,775 - +1.1 27,775 - -1.7 27,863 + +0.6 27,863 + -3.1 27,864 - -0.9 27,864 - +0.4 27,864 - -0.7 27,885 + +0.2 27,885 + +0.2 27,886 - -0.3 27,886 - +0.9 27,886 - +1.2 27,886 - -1.1 27,886 - -1.6 27,917 + -0.6 28,054 + PP_0024 0.12 +0.4 28,055 - PP_0024 0.12 +0.9 28,055 - PP_0024 0.12 +0.1 28,094 + PP_0024 0.14 +0.2 28,108 + PP_0024 0.15 +1.0 28,108 + PP_0024 0.15 +1.7 28,108 + PP_0024 0.15 +0.0 28,108 + PP_0024 0.15 -0.7 28,109 - PP_0024 0.15 +0.1 28,109 - PP_0024 0.15 -0.5 28,109 - PP_0024 0.15 +0.7 28,112 + PP_0024 0.15 +0.2 28,113 - PP_0024 0.15 +0.1 28,113 - PP_0024 0.15 -2.2
Or see this region's nucleotide sequence