Strain Fitness in Pseudomonas sp. RS175 around PFR28_02631

Experiment: caffeic (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_02629 and PFR28_02630 are separated by 2 nucleotidesPFR28_02630 and PFR28_02631 overlap by 4 nucleotidesPFR28_02631 and PFR28_02632 are separated by 138 nucleotides PFR28_02629: PFR28_02629 - NADH-quinone oxidoreductase subunit C/D, at 3,107,736 to 3,109,520 _02629 PFR28_02630: PFR28_02630 - NADH-quinone oxidoreductase subunit E, at 3,109,523 to 3,110,020 _02630 PFR28_02631: PFR28_02631 - NADH-quinone oxidoreductase subunit F, at 3,110,017 to 3,111,375 _02631 PFR28_02632: PFR28_02632 - NADH-quinone oxidoreductase subunit G, at 3,111,514 to 3,114,228 _02632 Position (kb) 3110 3111 3112Strain fitness (log2 ratio) -1 0 1at 3111.383 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction caffeic (C) 2.5 mM
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3,111,383 + +1.7

Or see this region's nucleotide sequence