Experiment: caffeic (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00369 and PFR28_00370 are separated by 91 nucleotides PFR28_00370 and PFR28_00371 are separated by 341 nucleotides PFR28_00371 and PFR28_00372 overlap by 1 nucleotides
PFR28_00369: PFR28_00369 - Adenylate kinase, at 404,988 to 405,635
_00369
PFR28_00370: PFR28_00370 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 405,727 to 406,404
_00370
PFR28_00371: PFR28_00371 - hypothetical protein, at 406,746 to 407,054
_00371
PFR28_00372: PFR28_00372 - hypothetical protein, at 407,054 to 407,914
_00372
Position (kb) 405
406
407 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 404.879 kb on + strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.961 kb on + strand at 404.961 kb on + strand at 404.961 kb on + strand at 405.686 kb on + strand at 405.687 kb on - strand at 405.687 kb on - strand at 405.687 kb on - strand at 405.687 kb on - strand at 405.687 kb on - strand at 405.688 kb on + strand at 405.688 kb on + strand at 405.688 kb on + strand at 405.720 kb on + strand at 406.402 kb on + strand at 406.403 kb on - strand at 406.482 kb on - strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.672 kb on + strand at 406.673 kb on - strand at 406.673 kb on - strand at 406.676 kb on + strand at 406.676 kb on + strand at 406.676 kb on + strand at 406.677 kb on - strand at 406.745 kb on + strand at 406.746 kb on - strand at 406.746 kb on - strand at 406.751 kb on + strand at 406.751 kb on + strand at 406.751 kb on + strand at 406.751 kb on + strand at 406.751 kb on + strand at 406.751 kb on + strand at 406.751 kb on + strand at 406.752 kb on - strand at 406.752 kb on - strand at 406.752 kb on - strand at 406.752 kb on - strand at 406.753 kb on + strand at 406.753 kb on + strand at 406.754 kb on - strand at 406.754 kb on - strand at 406.754 kb on - strand at 406.754 kb on - strand at 406.776 kb on + strand at 406.799 kb on + strand, within PFR28_00371 at 406.799 kb on + strand, within PFR28_00371 at 406.800 kb on - strand, within PFR28_00371 at 406.944 kb on + strand, within PFR28_00371 at 406.944 kb on + strand, within PFR28_00371 at 406.944 kb on + strand, within PFR28_00371 at 406.945 kb on - strand, within PFR28_00371 at 406.945 kb on - strand, within PFR28_00371 at 406.945 kb on - strand, within PFR28_00371 at 406.945 kb on - strand, within PFR28_00371 at 406.989 kb on + strand, within PFR28_00371 at 406.989 kb on + strand, within PFR28_00371 at 406.990 kb on - strand, within PFR28_00371 at 406.990 kb on - strand, within PFR28_00371 at 407.046 kb on + strand at 407.046 kb on + strand at 407.047 kb on - strand at 407.047 kb on - strand at 407.066 kb on + strand at 407.066 kb on + strand at 407.066 kb on + strand at 407.066 kb on + strand at 407.067 kb on - strand at 407.067 kb on - strand at 407.067 kb on - strand at 407.067 kb on - strand at 407.067 kb on - strand at 407.067 kb on - strand at 407.067 kb on - strand at 407.069 kb on + strand at 407.069 kb on + strand at 407.069 kb on + strand at 407.070 kb on - strand at 407.070 kb on - strand at 407.070 kb on - strand at 407.070 kb on - strand at 407.111 kb on + strand at 407.111 kb on + strand at 407.112 kb on - strand at 407.112 kb on - strand at 407.112 kb on - strand at 407.112 kb on - strand at 407.112 kb on - strand at 407.112 kb on - strand at 407.118 kb on - strand at 407.156 kb on + strand, within PFR28_00372 at 407.156 kb on + strand, within PFR28_00372 at 407.157 kb on - strand, within PFR28_00372 at 407.188 kb on + strand, within PFR28_00372 at 407.188 kb on + strand, within PFR28_00372 at 407.189 kb on - strand, within PFR28_00372 at 407.189 kb on - strand, within PFR28_00372 at 407.198 kb on + strand, within PFR28_00372 at 407.198 kb on + strand, within PFR28_00372 at 407.198 kb on + strand, within PFR28_00372 at 407.198 kb on + strand, within PFR28_00372 at 407.198 kb on + strand, within PFR28_00372 at 407.199 kb on - strand, within PFR28_00372 at 407.199 kb on - strand, within PFR28_00372 at 407.199 kb on - strand, within PFR28_00372 at 407.199 kb on - strand, within PFR28_00372 at 407.389 kb on - strand, within PFR28_00372
Per-strain Table
Position Strand Gene LocusTag Fraction caffeic (C) 2.5 mM remove 404,879 + -0.2 404,879 + +0.9 404,879 + -1.0 404,879 + -0.2 404,879 + +0.6 404,879 + -0.3 404,879 + +0.7 404,879 + -0.0 404,961 + +0.8 404,961 + +0.0 404,961 + -0.7 405,686 + +0.1 405,687 - +0.2 405,687 - -0.9 405,687 - -0.4 405,687 - -0.3 405,687 - +0.3 405,688 + -0.2 405,688 + -0.8 405,688 + +0.6 405,720 + +0.4 406,402 + +0.7 406,403 - -0.3 406,482 - +0.5 406,553 + -1.1 406,553 + -2.4 406,553 + -0.1 406,553 + +2.2 406,553 + -0.7 406,553 + -0.1 406,553 + +1.1 406,553 + +1.8 406,553 + +0.8 406,553 + +0.7 406,554 - +0.2 406,554 - -1.1 406,554 - +0.5 406,554 - -1.0 406,554 - +0.4 406,554 - -0.9 406,554 - +0.4 406,554 - +0.8 406,554 - +0.4 406,554 - -1.4 406,554 - -0.6 406,554 - -0.8 406,554 - -0.6 406,554 - +0.6 406,554 - -1.8 406,554 - -0.0 406,554 - +0.2 406,672 + +1.3 406,673 - -1.5 406,673 - +0.2 406,676 + -0.1 406,676 + +1.5 406,676 + +0.5 406,677 - +0.1 406,745 + -0.5 406,746 - -2.1 406,746 - -2.1 406,751 + +0.5 406,751 + +0.3 406,751 + -0.5 406,751 + +0.8 406,751 + +0.5 406,751 + +1.8 406,751 + -4.5 406,752 - -1.3 406,752 - -1.8 406,752 - -2.5 406,752 - -2.4 406,753 + -1.4 406,753 + -0.8 406,754 - -1.2 406,754 - -1.3 406,754 - -2.0 406,754 - -3.0 406,776 + -1.0 406,799 + PFR28_00371 0.17 -1.7 406,799 + PFR28_00371 0.17 -1.1 406,800 - PFR28_00371 0.17 -2.0 406,944 + PFR28_00371 0.64 +0.3 406,944 + PFR28_00371 0.64 -0.9 406,944 + PFR28_00371 0.64 -0.9 406,945 - PFR28_00371 0.64 -2.2 406,945 - PFR28_00371 0.64 -1.1 406,945 - PFR28_00371 0.64 -3.7 406,945 - PFR28_00371 0.64 -3.8 406,989 + PFR28_00371 0.79 +0.3 406,989 + PFR28_00371 0.79 -1.3 406,990 - PFR28_00371 0.79 -0.9 406,990 - PFR28_00371 0.79 +0.6 407,046 + -0.6 407,046 + +0.4 407,047 - -3.7 407,047 - -1.8 407,066 + -1.4 407,066 + -0.5 407,066 + -0.3 407,066 + -0.5 407,067 - -2.0 407,067 - -0.1 407,067 - -0.8 407,067 - -0.9 407,067 - +2.8 407,067 - -0.1 407,067 - -0.3 407,069 + +0.5 407,069 + -0.9 407,069 + +0.3 407,070 - -0.6 407,070 - -0.4 407,070 - +1.2 407,070 - -1.6 407,111 + -0.8 407,111 + -1.8 407,112 - -1.1 407,112 - -3.0 407,112 - +0.0 407,112 - -3.7 407,112 - -0.6 407,112 - -1.1 407,118 - -0.7 407,156 + PFR28_00372 0.12 +0.6 407,156 + PFR28_00372 0.12 -0.5 407,157 - PFR28_00372 0.12 -0.4 407,188 + PFR28_00372 0.16 -0.5 407,188 + PFR28_00372 0.16 -0.3 407,189 - PFR28_00372 0.16 -0.5 407,189 - PFR28_00372 0.16 -2.0 407,198 + PFR28_00372 0.17 +0.6 407,198 + PFR28_00372 0.17 +1.1 407,198 + PFR28_00372 0.17 -1.2 407,198 + PFR28_00372 0.17 +3.5 407,198 + PFR28_00372 0.17 +1.0 407,199 - PFR28_00372 0.17 -1.4 407,199 - PFR28_00372 0.17 -0.8 407,199 - PFR28_00372 0.17 +0.6 407,199 - PFR28_00372 0.17 +0.4 407,389 - PFR28_00372 0.39 -1.6
Or see this region's nucleotide sequence