Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4206

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4204 and PfGW456L13_4205 are separated by 34 nucleotidesPfGW456L13_4205 and PfGW456L13_4206 are separated by 114 nucleotidesPfGW456L13_4206 and PfGW456L13_4207 are separated by 369 nucleotides PfGW456L13_4204 - ABC transporter, ATP-binding protein, at 4,715,232 to 4,716,221 _4204 PfGW456L13_4205 - Phosphoserine phosphatase (EC 3.1.3.3), at 4,716,256 to 4,716,909 _4205 PfGW456L13_4206 - Quinone oxidoreductase (EC 1.6.5.5), at 4,717,024 to 4,717,722 _4206 PfGW456L13_4207 - Periplasmic protease, at 4,718,092 to 4,720,206 _4207 Position (kb) 4717 4718Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4716.214 kb on + strandat 4716.215 kb on - strandat 4716.215 kb on - strandat 4716.424 kb on + strand, within PfGW456L13_4205at 4716.424 kb on + strand, within PfGW456L13_4205at 4716.424 kb on + strand, within PfGW456L13_4205at 4716.424 kb on + strand, within PfGW456L13_4205at 4716.424 kb on + strand, within PfGW456L13_4205at 4716.424 kb on + strand, within PfGW456L13_4205at 4716.424 kb on + strand, within PfGW456L13_4205at 4716.425 kb on - strand, within PfGW456L13_4205at 4716.425 kb on - strand, within PfGW456L13_4205at 4716.425 kb on - strand, within PfGW456L13_4205at 4716.425 kb on - strand, within PfGW456L13_4205at 4716.425 kb on - strand, within PfGW456L13_4205at 4716.425 kb on - strand, within PfGW456L13_4205at 4716.425 kb on - strand, within PfGW456L13_4205at 4716.425 kb on - strand, within PfGW456L13_4205at 4716.679 kb on + strand, within PfGW456L13_4205at 4716.679 kb on + strand, within PfGW456L13_4205at 4716.680 kb on - strand, within PfGW456L13_4205at 4716.784 kb on + strand, within PfGW456L13_4205at 4716.785 kb on - strand, within PfGW456L13_4205at 4716.897 kb on + strandat 4716.898 kb on - strandat 4716.908 kb on - strandat 4717.071 kb on + strandat 4717.071 kb on + strandat 4717.071 kb on + strandat 4717.072 kb on - strandat 4717.075 kb on - strandat 4717.075 kb on - strandat 4717.075 kb on - strandat 4717.075 kb on - strandat 4717.358 kb on + strand, within PfGW456L13_4206at 4717.359 kb on - strand, within PfGW456L13_4206at 4717.359 kb on - strand, within PfGW456L13_4206at 4717.466 kb on + strand, within PfGW456L13_4206at 4717.466 kb on + strand, within PfGW456L13_4206at 4717.810 kb on + strandat 4717.810 kb on + strandat 4717.903 kb on + strandat 4717.903 kb on + strandat 4717.903 kb on + strandat 4717.903 kb on + strandat 4717.904 kb on - strandat 4717.904 kb on - strandat 4717.904 kb on - strandat 4717.904 kb on - strandat 4717.905 kb on + strandat 4717.905 kb on + strandat 4717.905 kb on + strandat 4717.906 kb on - strandat 4717.906 kb on - strandat 4717.952 kb on - strandat 4718.023 kb on + strandat 4718.023 kb on + strandat 4718.024 kb on - strandat 4718.088 kb on + strandat 4718.089 kb on - strandat 4718.089 kb on - strandat 4718.089 kb on - strandat 4718.091 kb on + strandat 4718.091 kb on + strandat 4718.091 kb on + strandat 4718.091 kb on + strandat 4718.091 kb on + strandat 4718.091 kb on + strandat 4718.092 kb on - strandat 4718.092 kb on - strandat 4718.160 kb on - strandat 4718.197 kb on - strandat 4718.197 kb on - strandat 4718.197 kb on - strandat 4718.197 kb on - strandat 4718.212 kb on - strandat 4718.212 kb on - strandat 4718.291 kb on - strandat 4718.333 kb on - strand, within PfGW456L13_4207at 4718.333 kb on - strand, within PfGW456L13_4207at 4718.333 kb on - strand, within PfGW456L13_4207at 4718.341 kb on + strand, within PfGW456L13_4207at 4718.342 kb on - strand, within PfGW456L13_4207at 4718.342 kb on - strand, within PfGW456L13_4207at 4718.371 kb on + strand, within PfGW456L13_4207at 4718.467 kb on + strand, within PfGW456L13_4207at 4718.468 kb on - strand, within PfGW456L13_4207at 4718.511 kb on + strand, within PfGW456L13_4207

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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4,716,214 + -0.4
4,716,215 - +0.0
4,716,215 - +1.1
4,716,424 + PfGW456L13_4205 0.26 +1.5
4,716,424 + PfGW456L13_4205 0.26 +1.8
4,716,424 + PfGW456L13_4205 0.26 -0.8
4,716,424 + PfGW456L13_4205 0.26 +0.1
4,716,424 + PfGW456L13_4205 0.26 +0.7
4,716,424 + PfGW456L13_4205 0.26 +0.6
4,716,424 + PfGW456L13_4205 0.26 +0.5
4,716,425 - PfGW456L13_4205 0.26 +0.2
4,716,425 - PfGW456L13_4205 0.26 +0.5
4,716,425 - PfGW456L13_4205 0.26 -0.8
4,716,425 - PfGW456L13_4205 0.26 +0.7
4,716,425 - PfGW456L13_4205 0.26 -0.2
4,716,425 - PfGW456L13_4205 0.26 -0.4
4,716,425 - PfGW456L13_4205 0.26 -1.0
4,716,425 - PfGW456L13_4205 0.26 +0.1
4,716,679 + PfGW456L13_4205 0.65 +0.7
4,716,679 + PfGW456L13_4205 0.65 +0.2
4,716,680 - PfGW456L13_4205 0.65 +1.1
4,716,784 + PfGW456L13_4205 0.81 +0.3
4,716,785 - PfGW456L13_4205 0.81 -0.0
4,716,897 + +0.5
4,716,898 - -0.6
4,716,908 - +0.3
4,717,071 + -0.5
4,717,071 + -0.0
4,717,071 + -1.3
4,717,072 - +0.2
4,717,075 - +1.0
4,717,075 - +0.1
4,717,075 - +1.0
4,717,075 - +1.9
4,717,358 + PfGW456L13_4206 0.48 -0.8
4,717,359 - PfGW456L13_4206 0.48 -0.7
4,717,359 - PfGW456L13_4206 0.48 +1.6
4,717,466 + PfGW456L13_4206 0.63 +0.6
4,717,466 + PfGW456L13_4206 0.63 -0.9
4,717,810 + -2.2
4,717,810 + -0.7
4,717,903 + -2.0
4,717,903 + +0.3
4,717,903 + +0.3
4,717,903 + -1.5
4,717,904 - -0.0
4,717,904 - -1.0
4,717,904 - +0.7
4,717,904 - -0.4
4,717,905 + +1.9
4,717,905 + -0.4
4,717,905 + -0.8
4,717,906 - -0.1
4,717,906 - +1.3
4,717,952 - -1.1
4,718,023 + +0.7
4,718,023 + +0.7
4,718,024 - -0.5
4,718,088 + -0.1
4,718,089 - -0.9
4,718,089 - -1.1
4,718,089 - -0.0
4,718,091 + +1.2
4,718,091 + +1.0
4,718,091 + -0.3
4,718,091 + -0.3
4,718,091 + -0.8
4,718,091 + +0.7
4,718,092 - -1.2
4,718,092 - -0.8
4,718,160 - -0.2
4,718,197 - +0.1
4,718,197 - -0.4
4,718,197 - -0.0
4,718,197 - -1.4
4,718,212 - -1.1
4,718,212 - +1.0
4,718,291 - -0.4
4,718,333 - PfGW456L13_4207 0.11 +0.2
4,718,333 - PfGW456L13_4207 0.11 -0.8
4,718,333 - PfGW456L13_4207 0.11 -1.6
4,718,341 + PfGW456L13_4207 0.12 -1.8
4,718,342 - PfGW456L13_4207 0.12 +1.1
4,718,342 - PfGW456L13_4207 0.12 -1.4
4,718,371 + PfGW456L13_4207 0.13 -2.9
4,718,467 + PfGW456L13_4207 0.18 +1.6
4,718,468 - PfGW456L13_4207 0.18 -0.0
4,718,511 + PfGW456L13_4207 0.20 -2.5

Or see this region's nucleotide sequence