Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2518

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2517 and PfGW456L13_2518 are separated by 247 nucleotidesPfGW456L13_2518 and PfGW456L13_2519 overlap by 2 nucleotides PfGW456L13_2517 - FIG067310: hypothetical protein, at 2,782,533 to 2,784,014 _2517 PfGW456L13_2518 - hypothetical protein, at 2,784,262 to 2,784,378 _2518 PfGW456L13_2519 - 3-oxosteroid 1-dehydrogenase (EC 1.3.99.4), at 2,784,377 to 2,786,119 _2519 Position (kb) 2784 2785Strain fitness (log2 ratio) -3 -2 -1 0 1at 2783.263 kb on + strand, within PfGW456L13_2517at 2783.362 kb on + strand, within PfGW456L13_2517at 2783.362 kb on + strand, within PfGW456L13_2517at 2783.362 kb on + strand, within PfGW456L13_2517at 2783.362 kb on + strand, within PfGW456L13_2517at 2783.363 kb on - strand, within PfGW456L13_2517at 2783.363 kb on - strand, within PfGW456L13_2517at 2783.363 kb on - strand, within PfGW456L13_2517at 2783.366 kb on + strand, within PfGW456L13_2517at 2783.367 kb on - strand, within PfGW456L13_2517at 2783.367 kb on - strand, within PfGW456L13_2517at 2783.367 kb on - strand, within PfGW456L13_2517at 2783.401 kb on + strand, within PfGW456L13_2517at 2783.402 kb on - strand, within PfGW456L13_2517at 2783.402 kb on - strand, within PfGW456L13_2517at 2783.402 kb on - strand, within PfGW456L13_2517at 2783.402 kb on - strand, within PfGW456L13_2517at 2783.402 kb on - strand, within PfGW456L13_2517at 2783.402 kb on - strand, within PfGW456L13_2517at 2783.407 kb on + strand, within PfGW456L13_2517at 2783.410 kb on + strand, within PfGW456L13_2517at 2783.632 kb on + strand, within PfGW456L13_2517at 2783.632 kb on + strand, within PfGW456L13_2517at 2783.638 kb on + strand, within PfGW456L13_2517at 2783.639 kb on - strand, within PfGW456L13_2517at 2783.639 kb on - strand, within PfGW456L13_2517at 2783.639 kb on - strand, within PfGW456L13_2517at 2783.641 kb on + strand, within PfGW456L13_2517at 2783.780 kb on - strand, within PfGW456L13_2517at 2783.809 kb on + strand, within PfGW456L13_2517at 2783.810 kb on - strand, within PfGW456L13_2517at 2783.959 kb on + strandat 2784.054 kb on + strandat 2784.054 kb on + strandat 2784.055 kb on - strandat 2784.055 kb on - strandat 2784.096 kb on + strandat 2784.105 kb on + strandat 2784.106 kb on - strandat 2784.181 kb on + strandat 2784.181 kb on + strandat 2784.233 kb on - strandat 2784.264 kb on - strandat 2784.614 kb on + strand, within PfGW456L13_2519at 2784.614 kb on + strand, within PfGW456L13_2519at 2784.614 kb on + strand, within PfGW456L13_2519at 2784.615 kb on - strand, within PfGW456L13_2519at 2784.615 kb on - strand, within PfGW456L13_2519at 2784.615 kb on - strand, within PfGW456L13_2519at 2784.615 kb on - strand, within PfGW456L13_2519at 2784.665 kb on + strand, within PfGW456L13_2519at 2784.665 kb on + strand, within PfGW456L13_2519at 2784.749 kb on + strand, within PfGW456L13_2519at 2784.750 kb on - strand, within PfGW456L13_2519at 2784.750 kb on - strand, within PfGW456L13_2519at 2784.750 kb on - strand, within PfGW456L13_2519at 2784.752 kb on + strand, within PfGW456L13_2519at 2785.236 kb on - strand, within PfGW456L13_2519at 2785.368 kb on - strand, within PfGW456L13_2519at 2785.368 kb on - strand, within PfGW456L13_2519at 2785.368 kb on - strand, within PfGW456L13_2519at 2785.368 kb on - strand, within PfGW456L13_2519

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,783,263 + PfGW456L13_2517 0.49 -2.6
2,783,362 + PfGW456L13_2517 0.56 -0.2
2,783,362 + PfGW456L13_2517 0.56 +0.7
2,783,362 + PfGW456L13_2517 0.56 -1.0
2,783,362 + PfGW456L13_2517 0.56 -0.3
2,783,363 - PfGW456L13_2517 0.56 -2.2
2,783,363 - PfGW456L13_2517 0.56 -0.4
2,783,363 - PfGW456L13_2517 0.56 -0.1
2,783,366 + PfGW456L13_2517 0.56 +0.0
2,783,367 - PfGW456L13_2517 0.56 -2.8
2,783,367 - PfGW456L13_2517 0.56 -0.7
2,783,367 - PfGW456L13_2517 0.56 -1.7
2,783,401 + PfGW456L13_2517 0.59 -1.6
2,783,402 - PfGW456L13_2517 0.59 -0.5
2,783,402 - PfGW456L13_2517 0.59 +0.8
2,783,402 - PfGW456L13_2517 0.59 +0.6
2,783,402 - PfGW456L13_2517 0.59 -1.9
2,783,402 - PfGW456L13_2517 0.59 +1.5
2,783,402 - PfGW456L13_2517 0.59 -2.5
2,783,407 + PfGW456L13_2517 0.59 -0.7
2,783,410 + PfGW456L13_2517 0.59 -0.6
2,783,632 + PfGW456L13_2517 0.74 +1.3
2,783,632 + PfGW456L13_2517 0.74 +0.3
2,783,638 + PfGW456L13_2517 0.75 +0.8
2,783,639 - PfGW456L13_2517 0.75 -0.3
2,783,639 - PfGW456L13_2517 0.75 +0.6
2,783,639 - PfGW456L13_2517 0.75 +0.2
2,783,641 + PfGW456L13_2517 0.75 -0.4
2,783,780 - PfGW456L13_2517 0.84 -0.2
2,783,809 + PfGW456L13_2517 0.86 -0.5
2,783,810 - PfGW456L13_2517 0.86 -0.1
2,783,959 + -1.0
2,784,054 + +0.3
2,784,054 + +0.9
2,784,055 - -0.0
2,784,055 - +0.9
2,784,096 + +0.9
2,784,105 + -0.4
2,784,106 - +0.5
2,784,181 + -0.0
2,784,181 + -0.6
2,784,233 - +0.5
2,784,264 - -1.0
2,784,614 + PfGW456L13_2519 0.14 +0.8
2,784,614 + PfGW456L13_2519 0.14 -0.8
2,784,614 + PfGW456L13_2519 0.14 -0.4
2,784,615 - PfGW456L13_2519 0.14 -0.1
2,784,615 - PfGW456L13_2519 0.14 +0.8
2,784,615 - PfGW456L13_2519 0.14 -1.0
2,784,615 - PfGW456L13_2519 0.14 +1.0
2,784,665 + PfGW456L13_2519 0.17 -1.4
2,784,665 + PfGW456L13_2519 0.17 +0.8
2,784,749 + PfGW456L13_2519 0.21 -0.4
2,784,750 - PfGW456L13_2519 0.21 +0.5
2,784,750 - PfGW456L13_2519 0.21 +0.9
2,784,750 - PfGW456L13_2519 0.21 +0.2
2,784,752 + PfGW456L13_2519 0.22 -2.1
2,785,236 - PfGW456L13_2519 0.49 -1.7
2,785,368 - PfGW456L13_2519 0.57 -0.0
2,785,368 - PfGW456L13_2519 0.57 -0.3
2,785,368 - PfGW456L13_2519 0.57 -0.7
2,785,368 - PfGW456L13_2519 0.57 -0.1

Or see this region's nucleotide sequence