Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2375

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2374 and PfGW456L13_2375 are separated by 72 nucleotidesPfGW456L13_2375 and PfGW456L13_2376 are separated by 11 nucleotides PfGW456L13_2374 - Non-ribosomal peptide synthetase modules, pyoverdine, at 2,608,638 to 2,617,844 _2374 PfGW456L13_2375 - SyrP-like protein, at 2,617,917 to 2,618,975 _2375 PfGW456L13_2376 - Peptide synthetase, at 2,618,987 to 2,622,085 _2376 Position (kb) 2617 2618 2619Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2617.242 kb on - strandat 2617.312 kb on + strandat 2617.312 kb on + strandat 2617.313 kb on - strandat 2617.313 kb on - strandat 2617.313 kb on - strandat 2617.316 kb on - strandat 2617.489 kb on - strandat 2617.591 kb on - strandat 2617.916 kb on + strandat 2617.916 kb on + strandat 2618.214 kb on + strand, within PfGW456L13_2375at 2618.214 kb on + strand, within PfGW456L13_2375at 2618.214 kb on + strand, within PfGW456L13_2375at 2618.215 kb on - strand, within PfGW456L13_2375at 2618.265 kb on + strand, within PfGW456L13_2375at 2618.265 kb on + strand, within PfGW456L13_2375at 2618.265 kb on + strand, within PfGW456L13_2375at 2618.265 kb on + strand, within PfGW456L13_2375at 2618.266 kb on - strand, within PfGW456L13_2375at 2618.266 kb on - strand, within PfGW456L13_2375at 2618.266 kb on - strand, within PfGW456L13_2375at 2618.266 kb on - strand, within PfGW456L13_2375at 2618.266 kb on - strand, within PfGW456L13_2375at 2618.266 kb on - strand, within PfGW456L13_2375at 2618.281 kb on - strand, within PfGW456L13_2375at 2618.350 kb on - strand, within PfGW456L13_2375at 2618.355 kb on + strand, within PfGW456L13_2375at 2618.355 kb on + strand, within PfGW456L13_2375at 2618.356 kb on - strand, within PfGW456L13_2375at 2618.356 kb on - strand, within PfGW456L13_2375at 2618.469 kb on + strand, within PfGW456L13_2375at 2618.469 kb on + strand, within PfGW456L13_2375at 2618.469 kb on + strand, within PfGW456L13_2375at 2618.469 kb on + strand, within PfGW456L13_2375at 2618.470 kb on - strand, within PfGW456L13_2375at 2618.470 kb on - strand, within PfGW456L13_2375at 2618.470 kb on - strand, within PfGW456L13_2375at 2618.470 kb on - strand, within PfGW456L13_2375at 2618.470 kb on - strand, within PfGW456L13_2375at 2618.470 kb on - strand, within PfGW456L13_2375at 2618.481 kb on + strand, within PfGW456L13_2375at 2618.481 kb on + strand, within PfGW456L13_2375at 2618.550 kb on + strandat 2618.550 kb on + strand, within PfGW456L13_2375at 2618.817 kb on + strand, within PfGW456L13_2375at 2618.818 kb on - strand, within PfGW456L13_2375at 2618.818 kb on - strand, within PfGW456L13_2375at 2618.973 kb on + strandat 2618.973 kb on + strandat 2618.973 kb on + strandat 2619.015 kb on + strandat 2619.015 kb on + strandat 2619.016 kb on - strandat 2619.021 kb on + strandat 2619.021 kb on + strandat 2619.022 kb on - strandat 2619.022 kb on - strandat 2619.050 kb on + strandat 2619.051 kb on - strandat 2619.051 kb on - strandat 2619.498 kb on - strand, within PfGW456L13_2376

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,617,242 - -0.1
2,617,312 + -0.6
2,617,312 + +0.3
2,617,313 - +0.3
2,617,313 - +0.7
2,617,313 - -0.0
2,617,316 - +0.0
2,617,489 - -1.4
2,617,591 - +0.8
2,617,916 + +2.0
2,617,916 + +1.8
2,618,214 + PfGW456L13_2375 0.28 +0.5
2,618,214 + PfGW456L13_2375 0.28 -0.0
2,618,214 + PfGW456L13_2375 0.28 -0.4
2,618,215 - PfGW456L13_2375 0.28 -0.1
2,618,265 + PfGW456L13_2375 0.33 -1.9
2,618,265 + PfGW456L13_2375 0.33 -0.1
2,618,265 + PfGW456L13_2375 0.33 +1.2
2,618,265 + PfGW456L13_2375 0.33 -0.3
2,618,266 - PfGW456L13_2375 0.33 -0.4
2,618,266 - PfGW456L13_2375 0.33 -0.4
2,618,266 - PfGW456L13_2375 0.33 +1.2
2,618,266 - PfGW456L13_2375 0.33 +0.0
2,618,266 - PfGW456L13_2375 0.33 -0.6
2,618,266 - PfGW456L13_2375 0.33 -1.3
2,618,281 - PfGW456L13_2375 0.34 -0.3
2,618,350 - PfGW456L13_2375 0.41 +0.3
2,618,355 + PfGW456L13_2375 0.41 -0.6
2,618,355 + PfGW456L13_2375 0.41 +1.5
2,618,356 - PfGW456L13_2375 0.41 -0.1
2,618,356 - PfGW456L13_2375 0.41 +0.3
2,618,469 + PfGW456L13_2375 0.52 -0.4
2,618,469 + PfGW456L13_2375 0.52 +0.2
2,618,469 + PfGW456L13_2375 0.52 +0.5
2,618,469 + PfGW456L13_2375 0.52 -0.4
2,618,470 - PfGW456L13_2375 0.52 +0.6
2,618,470 - PfGW456L13_2375 0.52 +0.6
2,618,470 - PfGW456L13_2375 0.52 +0.2
2,618,470 - PfGW456L13_2375 0.52 -1.1
2,618,470 - PfGW456L13_2375 0.52 -0.2
2,618,470 - PfGW456L13_2375 0.52 +0.3
2,618,481 + PfGW456L13_2375 0.53 +0.1
2,618,481 + PfGW456L13_2375 0.53 -1.3
2,618,550 + -1.1
2,618,550 + PfGW456L13_2375 0.60 +1.0
2,618,817 + PfGW456L13_2375 0.85 -0.6
2,618,818 - PfGW456L13_2375 0.85 +1.5
2,618,818 - PfGW456L13_2375 0.85 -0.1
2,618,973 + -2.8
2,618,973 + +1.1
2,618,973 + -1.1
2,619,015 + +1.2
2,619,015 + -1.1
2,619,016 - -0.1
2,619,021 + -0.5
2,619,021 + +0.5
2,619,022 - +0.8
2,619,022 - +0.5
2,619,050 + -0.1
2,619,051 - -0.1
2,619,051 - -0.3
2,619,498 - PfGW456L13_2376 0.16 -0.1

Or see this region's nucleotide sequence