Strain Fitness in Pseudomonas putida KT2440 around PP_5543

Experiment: Isobutyl alcohol 0.6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2953 and PP_2954 are separated by 114 nucleotidesPP_2954 and PP_5543 are separated by 109 nucleotidesPP_5543 and PP_2955 are separated by 56 nucleotidesPP_2955 and PP_2956 are separated by 3 nucleotides PP_2953: PP_2953 - Alcohol dehydrogenase, zinc-containing, at 3,356,953 to 3,357,960 _2953 PP_2954: PP_2954 - conserved protein of unknown function, at 3,358,075 to 3,358,461 _2954 PP_5543: PP_5543 - protein of unknown function, at 3,358,571 to 3,358,714 _5543 PP_2955: PP_2955 - Magnesium/cobalt transporter, CorA family, at 3,358,771 to 3,359,682 _2955 PP_2956: PP_2956 - Ribosomal protein S6 modification protein-related protein, at 3,359,686 to 3,361,266 _2956 Position (kb) 3358 3359Strain fitness (log2 ratio) -2 -1 0 1at 3357.624 kb on + strand, within PP_2953at 3357.772 kb on + strand, within PP_2953at 3357.849 kb on + strand, within PP_2953at 3357.849 kb on + strand, within PP_2953at 3357.850 kb on - strand, within PP_2953at 3358.058 kb on + strandat 3358.132 kb on + strand, within PP_2954at 3358.133 kb on - strand, within PP_2954at 3358.133 kb on - strand, within PP_2954at 3358.133 kb on - strand, within PP_2954at 3358.264 kb on + strand, within PP_2954at 3358.264 kb on + strand, within PP_2954at 3358.264 kb on + strand, within PP_2954at 3358.264 kb on + strand, within PP_2954at 3358.265 kb on - strand, within PP_2954at 3358.265 kb on - strand, within PP_2954at 3358.304 kb on - strand, within PP_2954at 3358.499 kb on + strandat 3358.500 kb on - strandat 3358.500 kb on - strandat 3358.500 kb on - strandat 3358.653 kb on - strandat 3358.666 kb on + strand, within PP_5543at 3358.666 kb on + strand, within PP_5543at 3358.666 kb on + strand, within PP_5543at 3358.687 kb on + strand, within PP_5543at 3358.687 kb on + strand, within PP_5543at 3358.688 kb on - strand, within PP_5543at 3358.688 kb on - strand, within PP_5543at 3358.691 kb on + strand, within PP_5543at 3358.753 kb on - strandat 3358.753 kb on - strandat 3358.753 kb on - strandat 3358.779 kb on + strandat 3358.779 kb on + strandat 3358.813 kb on + strandat 3359.010 kb on + strand, within PP_2955at 3359.043 kb on - strand, within PP_2955at 3359.043 kb on - strand, within PP_2955at 3359.168 kb on + strand, within PP_2955at 3359.168 kb on + strand, within PP_2955at 3359.171 kb on + strand, within PP_2955at 3359.187 kb on + strand, within PP_2955at 3359.195 kb on + strand, within PP_2955at 3359.195 kb on + strand, within PP_2955at 3359.196 kb on - strand, within PP_2955at 3359.266 kb on + strand, within PP_2955at 3359.288 kb on + strand, within PP_2955at 3359.288 kb on + strand, within PP_2955at 3359.338 kb on - strand, within PP_2955at 3359.338 kb on - strand, within PP_2955at 3359.359 kb on + strand, within PP_2955at 3359.417 kb on - strand, within PP_2955at 3359.669 kb on + strandat 3359.673 kb on - strandat 3359.709 kb on + strandat 3359.710 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Isobutyl alcohol 0.6 vol%
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3,357,624 + PP_2953 0.67 -0.7
3,357,772 + PP_2953 0.81 -0.5
3,357,849 + PP_2953 0.89 +1.0
3,357,849 + PP_2953 0.89 -0.5
3,357,850 - PP_2953 0.89 -0.9
3,358,058 + +1.0
3,358,132 + PP_2954 0.15 -1.0
3,358,133 - PP_2954 0.15 +0.3
3,358,133 - PP_2954 0.15 +1.3
3,358,133 - PP_2954 0.15 -0.1
3,358,264 + PP_2954 0.49 +0.1
3,358,264 + PP_2954 0.49 +1.1
3,358,264 + PP_2954 0.49 -0.1
3,358,264 + PP_2954 0.49 -1.2
3,358,265 - PP_2954 0.49 -0.1
3,358,265 - PP_2954 0.49 -0.4
3,358,304 - PP_2954 0.59 +0.5
3,358,499 + -0.2
3,358,500 - +0.6
3,358,500 - -0.2
3,358,500 - -1.2
3,358,653 - -1.4
3,358,666 + PP_5543 0.66 -0.8
3,358,666 + PP_5543 0.66 -0.1
3,358,666 + PP_5543 0.66 -1.1
3,358,687 + PP_5543 0.81 -1.3
3,358,687 + PP_5543 0.81 +0.4
3,358,688 - PP_5543 0.81 -0.7
3,358,688 - PP_5543 0.81 -0.7
3,358,691 + PP_5543 0.83 -0.3
3,358,753 - +0.5
3,358,753 - +0.0
3,358,753 - -0.0
3,358,779 + -0.2
3,358,779 + -0.5
3,358,813 + -0.4
3,359,010 + PP_2955 0.26 -0.0
3,359,043 - PP_2955 0.30 -0.1
3,359,043 - PP_2955 0.30 +0.1
3,359,168 + PP_2955 0.44 -0.6
3,359,168 + PP_2955 0.44 -0.1
3,359,171 + PP_2955 0.44 +0.6
3,359,187 + PP_2955 0.46 -0.6
3,359,195 + PP_2955 0.46 -0.2
3,359,195 + PP_2955 0.46 +0.0
3,359,196 - PP_2955 0.47 -0.2
3,359,266 + PP_2955 0.54 -0.4
3,359,288 + PP_2955 0.57 +0.8
3,359,288 + PP_2955 0.57 +0.6
3,359,338 - PP_2955 0.62 -1.2
3,359,338 - PP_2955 0.62 -2.4
3,359,359 + PP_2955 0.64 +1.3
3,359,417 - PP_2955 0.71 -0.6
3,359,669 + -0.6
3,359,673 - -0.6
3,359,709 + -1.4
3,359,710 - +0.1

Or see this region's nucleotide sequence