Strain Fitness in Pseudomonas putida KT2440 around PP_4273

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
4,857,054	+		PP_5671	0.50	+0.3
4,857,055	-		PP_5671	0.51	-0.9
4,857,116	+		PP_5671	0.82	-1.2
4,857,116	+		PP_5671	0.82	+0.9
4,857,116	+		PP_5671	0.82	-0.7
4,857,116	+		PP_5671	0.82	+0.9
4,857,117	-		PP_5671	0.83	-0.6
4,857,117	-				-0.6
4,857,117	-		PP_5671	0.83	+2.0
4,857,117	-		PP_5671	0.83	-0.9
4,857,117	-		PP_5671	0.83	+1.2
4,857,117	-		PP_5671	0.83	-0.0
4,857,117	-		PP_5671	0.83	-0.0
4,857,159	+				+0.2
4,857,160	-				+1.1
4,857,177	+				+0.5
4,857,177	+				-0.3
4,857,178	-				+0.3
4,857,323	-		PP_4271	0.78	-0.5
4,857,384	+				+1.0
4,857,385	-				+0.0
4,857,385	-				-0.6
4,857,393	+				+0.6
4,857,393	+				-0.0
4,857,459	-		PP_4272	0.15	-0.5
4,857,555	+		PP_4272	0.32	-1.8
4,857,555	+		PP_4272	0.32	+0.6
4,857,555	+		PP_4272	0.32	-2.1
4,857,555	+		PP_4272	0.32	-0.5
4,857,556	-		PP_4272	0.32	+0.2
4,857,556	-		PP_4272	0.32	-2.0
4,857,556	-		PP_4272	0.32	-0.1
4,857,556	-		PP_4272	0.32	+0.6
4,857,556	-		PP_4272	0.32	-1.8
4,857,565	-		PP_4272	0.34	+0.8
4,857,565	-		PP_4272	0.34	-1.8
4,857,572	+		PP_4272	0.35	-1.9
4,857,573	-		PP_4272	0.35	+0.8
4,857,721	-		PP_4272	0.61	+0.1
4,857,770	+		PP_4272	0.70	+0.6
4,857,774	+		PP_4272	0.71	+0.9
4,857,775	-		PP_4272	0.71	-0.5
4,857,775	-		PP_4272	0.71	+0.2
4,857,810	+		PP_4272	0.77	-0.6
4,857,810	+		PP_4272	0.77	+1.0
4,857,810	+		PP_4272	0.77	-0.0
4,857,811	-		PP_4272	0.78	-1.3
4,857,811	-		PP_4272	0.78	+0.1
4,857,811	-		PP_4272	0.78	-1.6
4,857,844	-		PP_4272	0.84	-0.3
4,857,858	-		PP_4272	0.86	+0.1
4,857,897	+				+0.3
4,857,897	+				-0.2
4,857,898	-				-1.0
4,857,898	-				+0.1
4,857,914	+				+0.5
4,857,915	-				-0.8
4,857,984	+				-0.0
4,857,985	-				-0.3
4,857,985	-				-0.2
4,858,005	-		PP_4273	0.13	-1.8
4,858,007	+		PP_4273	0.14	+0.4
4,858,506	-				-0.0
4,858,506	-				-2.2
4,858,506	-				-2.0
4,858,506	-				-0.0
4,858,506	-				-1.0
4,858,506	-				-0.7
4,858,506	-				-2.8
4,858,720	+				+0.7
4,858,721	-				-1.0
4,858,728	+				-0.7