Experiment: Isobutyl alcohol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5671 and PP_4271 are separated by 32 nucleotides PP_4271 and PP_4272 are separated by 15 nucleotides PP_4272 and PP_4273 are separated by 14 nucleotides PP_4273 and PP_4274 are separated by 349 nucleotides
PP_5671: PP_5671 - conserved protein of unknown function, at 4,856,956 to 4,857,150
_5671
PP_4271: PP_4271 - conserved protein of unknown function, at 4,857,183 to 4,857,362
_4271
PP_4272: PP_4272 - conserved membrane protein of unknown function, at 4,857,378 to 4,857,935
_4272
PP_4273: PP_4273 - Transcriptional regulator, MerR family, at 4,857,950 to 4,858,369
_4273
PP_4274: PP_4274 - DNA ligase, at 4,858,719 to 4,861,049
_4274
Position (kb)
4857
4858
4859 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4857.054 kb on + strand, within PP_5671 at 4857.055 kb on - strand, within PP_5671 at 4857.116 kb on + strand, within PP_5671 at 4857.116 kb on + strand, within PP_5671 at 4857.116 kb on + strand, within PP_5671 at 4857.116 kb on + strand, within PP_5671 at 4857.117 kb on - strand, within PP_5671 at 4857.117 kb on - strand at 4857.117 kb on - strand, within PP_5671 at 4857.117 kb on - strand, within PP_5671 at 4857.117 kb on - strand, within PP_5671 at 4857.117 kb on - strand, within PP_5671 at 4857.117 kb on - strand, within PP_5671 at 4857.159 kb on + strand at 4857.160 kb on - strand at 4857.177 kb on + strand at 4857.177 kb on + strand at 4857.178 kb on - strand at 4857.323 kb on - strand, within PP_4271 at 4857.384 kb on + strand at 4857.385 kb on - strand at 4857.385 kb on - strand at 4857.393 kb on + strand at 4857.393 kb on + strand at 4857.459 kb on - strand, within PP_4272 at 4857.555 kb on + strand, within PP_4272 at 4857.555 kb on + strand, within PP_4272 at 4857.555 kb on + strand, within PP_4272 at 4857.555 kb on + strand, within PP_4272 at 4857.556 kb on - strand, within PP_4272 at 4857.556 kb on - strand, within PP_4272 at 4857.556 kb on - strand, within PP_4272 at 4857.556 kb on - strand, within PP_4272 at 4857.556 kb on - strand, within PP_4272 at 4857.565 kb on - strand, within PP_4272 at 4857.565 kb on - strand, within PP_4272 at 4857.572 kb on + strand, within PP_4272 at 4857.573 kb on - strand, within PP_4272 at 4857.721 kb on - strand, within PP_4272 at 4857.770 kb on + strand, within PP_4272 at 4857.774 kb on + strand, within PP_4272 at 4857.775 kb on - strand, within PP_4272 at 4857.775 kb on - strand, within PP_4272 at 4857.810 kb on + strand, within PP_4272 at 4857.810 kb on + strand, within PP_4272 at 4857.810 kb on + strand, within PP_4272 at 4857.811 kb on - strand, within PP_4272 at 4857.811 kb on - strand, within PP_4272 at 4857.811 kb on - strand, within PP_4272 at 4857.844 kb on - strand, within PP_4272 at 4857.858 kb on - strand, within PP_4272 at 4857.897 kb on + strand at 4857.897 kb on + strand at 4857.898 kb on - strand at 4857.898 kb on - strand at 4857.914 kb on + strand at 4857.915 kb on - strand at 4857.984 kb on + strand at 4857.985 kb on - strand at 4857.985 kb on - strand at 4858.005 kb on - strand, within PP_4273 at 4858.007 kb on + strand, within PP_4273 at 4858.506 kb on - strand at 4858.506 kb on - strand at 4858.506 kb on - strand at 4858.506 kb on - strand at 4858.506 kb on - strand at 4858.506 kb on - strand at 4858.506 kb on - strand at 4858.720 kb on + strand at 4858.721 kb on - strand at 4858.728 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Isobutyl alcohol 0.6 vol% remove 4,857,054 + PP_5671 0.50 +0.3 4,857,055 - PP_5671 0.51 -0.9 4,857,116 + PP_5671 0.82 -1.2 4,857,116 + PP_5671 0.82 +0.9 4,857,116 + PP_5671 0.82 -0.7 4,857,116 + PP_5671 0.82 +0.9 4,857,117 - PP_5671 0.83 -0.6 4,857,117 - -0.6 4,857,117 - PP_5671 0.83 +2.0 4,857,117 - PP_5671 0.83 -0.9 4,857,117 - PP_5671 0.83 +1.2 4,857,117 - PP_5671 0.83 -0.0 4,857,117 - PP_5671 0.83 -0.0 4,857,159 + +0.2 4,857,160 - +1.1 4,857,177 + +0.5 4,857,177 + -0.3 4,857,178 - +0.3 4,857,323 - PP_4271 0.78 -0.5 4,857,384 + +1.0 4,857,385 - +0.0 4,857,385 - -0.6 4,857,393 + +0.6 4,857,393 + -0.0 4,857,459 - PP_4272 0.15 -0.5 4,857,555 + PP_4272 0.32 -1.8 4,857,555 + PP_4272 0.32 +0.6 4,857,555 + PP_4272 0.32 -2.1 4,857,555 + PP_4272 0.32 -0.5 4,857,556 - PP_4272 0.32 +0.2 4,857,556 - PP_4272 0.32 -2.0 4,857,556 - PP_4272 0.32 -0.1 4,857,556 - PP_4272 0.32 +0.6 4,857,556 - PP_4272 0.32 -1.8 4,857,565 - PP_4272 0.34 +0.8 4,857,565 - PP_4272 0.34 -1.8 4,857,572 + PP_4272 0.35 -1.9 4,857,573 - PP_4272 0.35 +0.8 4,857,721 - PP_4272 0.61 +0.1 4,857,770 + PP_4272 0.70 +0.6 4,857,774 + PP_4272 0.71 +0.9 4,857,775 - PP_4272 0.71 -0.5 4,857,775 - PP_4272 0.71 +0.2 4,857,810 + PP_4272 0.77 -0.6 4,857,810 + PP_4272 0.77 +1.0 4,857,810 + PP_4272 0.77 -0.0 4,857,811 - PP_4272 0.78 -1.3 4,857,811 - PP_4272 0.78 +0.1 4,857,811 - PP_4272 0.78 -1.6 4,857,844 - PP_4272 0.84 -0.3 4,857,858 - PP_4272 0.86 +0.1 4,857,897 + +0.3 4,857,897 + -0.2 4,857,898 - -1.0 4,857,898 - +0.1 4,857,914 + +0.5 4,857,915 - -0.8 4,857,984 + -0.0 4,857,985 - -0.3 4,857,985 - -0.2 4,858,005 - PP_4273 0.13 -1.8 4,858,007 + PP_4273 0.14 +0.4 4,858,506 - -0.0 4,858,506 - -2.2 4,858,506 - -2.0 4,858,506 - -0.0 4,858,506 - -1.0 4,858,506 - -0.7 4,858,506 - -2.8 4,858,720 + +0.7 4,858,721 - -1.0 4,858,728 + -0.7
Or see this region's nucleotide sequence