Experiment: Isobutyl alcohol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4250 and PP_4251 are separated by 13 nucleotides PP_4251 and PP_4252 are separated by 5 nucleotides PP_4252 and PP_4253 overlap by 4 nucleotides
PP_4250: PP_4250 - cytochrome c oxidase subunit I, cbb3-type, at 4,835,994 to 4,837,418
_4250
PP_4251: PP_4251 - cytochrome c oxidase subunit, cbb3-type, at 4,837,432 to 4,838,040
_4251
PP_4252: PP_4252 - cytochrome c oxidase subunit, cbb3-type, at 4,838,046 to 4,838,240
_4252
PP_4253: PP_4253 - cytochrome c oxidase subunit, cbb3-type, at 4,838,237 to 4,839,178
_4253
Position (kb)
4837
4838
4839 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4836.465 kb on + strand, within PP_4250 at 4836.466 kb on - strand, within PP_4250 at 4836.466 kb on - strand, within PP_4250 at 4836.466 kb on - strand, within PP_4250 at 4836.570 kb on + strand, within PP_4250 at 4836.607 kb on - strand, within PP_4250 at 4836.660 kb on + strand, within PP_4250 at 4836.660 kb on + strand, within PP_4250 at 4836.660 kb on + strand, within PP_4250 at 4836.660 kb on + strand, within PP_4250 at 4836.661 kb on - strand, within PP_4250 at 4836.661 kb on - strand, within PP_4250 at 4836.661 kb on - strand, within PP_4250 at 4836.661 kb on - strand, within PP_4250 at 4836.663 kb on + strand, within PP_4250 at 4836.663 kb on + strand, within PP_4250 at 4836.664 kb on - strand, within PP_4250 at 4836.666 kb on + strand, within PP_4250 at 4836.666 kb on + strand, within PP_4250 at 4836.666 kb on + strand, within PP_4250 at 4836.666 kb on + strand, within PP_4250 at 4836.667 kb on - strand, within PP_4250 at 4836.667 kb on - strand, within PP_4250 at 4836.667 kb on - strand, within PP_4250 at 4836.697 kb on - strand, within PP_4250 at 4836.697 kb on - strand, within PP_4250 at 4836.697 kb on - strand, within PP_4250 at 4836.697 kb on - strand, within PP_4250 at 4836.774 kb on + strand, within PP_4250 at 4836.774 kb on + strand, within PP_4250 at 4836.942 kb on + strand, within PP_4250 at 4837.081 kb on - strand, within PP_4250 at 4837.119 kb on + strand, within PP_4250 at 4837.119 kb on + strand, within PP_4250 at 4837.119 kb on + strand, within PP_4250 at 4837.120 kb on - strand, within PP_4250 at 4837.120 kb on - strand, within PP_4250 at 4837.167 kb on - strand, within PP_4250 at 4837.177 kb on - strand, within PP_4250 at 4837.254 kb on + strand, within PP_4250 at 4837.255 kb on - strand, within PP_4250 at 4837.484 kb on + strand at 4837.485 kb on - strand at 4837.485 kb on - strand at 4837.606 kb on + strand, within PP_4251 at 4837.607 kb on - strand, within PP_4251 at 4837.804 kb on + strand, within PP_4251 at 4837.804 kb on + strand, within PP_4251 at 4837.804 kb on + strand, within PP_4251 at 4837.805 kb on - strand, within PP_4251 at 4837.846 kb on + strand, within PP_4251 at 4837.927 kb on + strand, within PP_4251 at 4837.999 kb on + strand at 4838.000 kb on - strand at 4838.228 kb on + strand at 4838.254 kb on + strand at 4838.254 kb on + strand at 4838.255 kb on - strand at 4838.258 kb on + strand at 4838.258 kb on + strand at 4838.258 kb on + strand at 4838.258 kb on + strand at 4838.259 kb on - strand at 4838.259 kb on - strand at 4838.268 kb on + strand at 4838.268 kb on + strand at 4838.268 kb on + strand at 4838.376 kb on + strand, within PP_4253 at 4838.377 kb on - strand, within PP_4253 at 4838.384 kb on + strand, within PP_4253 at 4838.384 kb on + strand, within PP_4253 at 4838.451 kb on - strand at 4838.463 kb on - strand, within PP_4253 at 4839.010 kb on + strand, within PP_4253 at 4839.014 kb on + strand, within PP_4253
Per-strain Table
Position Strand Gene LocusTag Fraction Isobutyl alcohol 0.6 vol% remove 4,836,465 + PP_4250 0.33 -0.1 4,836,466 - PP_4250 0.33 +0.8 4,836,466 - PP_4250 0.33 +1.7 4,836,466 - PP_4250 0.33 -0.4 4,836,570 + PP_4250 0.40 -1.3 4,836,607 - PP_4250 0.43 -0.3 4,836,660 + PP_4250 0.47 -0.5 4,836,660 + PP_4250 0.47 +0.3 4,836,660 + PP_4250 0.47 +0.4 4,836,660 + PP_4250 0.47 -0.2 4,836,661 - PP_4250 0.47 -1.2 4,836,661 - PP_4250 0.47 -0.8 4,836,661 - PP_4250 0.47 -0.6 4,836,661 - PP_4250 0.47 -1.1 4,836,663 + PP_4250 0.47 -0.2 4,836,663 + PP_4250 0.47 -0.3 4,836,664 - PP_4250 0.47 -0.2 4,836,666 + PP_4250 0.47 -0.4 4,836,666 + PP_4250 0.47 -0.1 4,836,666 + PP_4250 0.47 +0.6 4,836,666 + PP_4250 0.47 +0.7 4,836,667 - PP_4250 0.47 -0.0 4,836,667 - PP_4250 0.47 -0.1 4,836,667 - PP_4250 0.47 +0.3 4,836,697 - PP_4250 0.49 +0.5 4,836,697 - PP_4250 0.49 +1.4 4,836,697 - PP_4250 0.49 +0.0 4,836,697 - PP_4250 0.49 -0.4 4,836,774 + PP_4250 0.55 +0.0 4,836,774 + PP_4250 0.55 +1.1 4,836,942 + PP_4250 0.67 -0.5 4,837,081 - PP_4250 0.76 -1.8 4,837,119 + PP_4250 0.79 +0.0 4,837,119 + PP_4250 0.79 -0.3 4,837,119 + PP_4250 0.79 -0.2 4,837,120 - PP_4250 0.79 +0.4 4,837,120 - PP_4250 0.79 -0.2 4,837,167 - PP_4250 0.82 -0.2 4,837,177 - PP_4250 0.83 -1.0 4,837,254 + PP_4250 0.88 -0.4 4,837,255 - PP_4250 0.88 -0.0 4,837,484 + -0.5 4,837,485 - -1.7 4,837,485 - -0.5 4,837,606 + PP_4251 0.29 -1.7 4,837,607 - PP_4251 0.29 +0.4 4,837,804 + PP_4251 0.61 -1.0 4,837,804 + PP_4251 0.61 -0.3 4,837,804 + PP_4251 0.61 -0.6 4,837,805 - PP_4251 0.61 -2.2 4,837,846 + PP_4251 0.68 -0.1 4,837,927 + PP_4251 0.81 -0.7 4,837,999 + +0.8 4,838,000 - -1.1 4,838,228 + +1.4 4,838,254 + -0.0 4,838,254 + +0.4 4,838,255 - -1.8 4,838,258 + +0.6 4,838,258 + -0.5 4,838,258 + +1.0 4,838,258 + +1.0 4,838,259 - -1.2 4,838,259 - -0.4 4,838,268 + -0.5 4,838,268 + -0.7 4,838,268 + -0.3 4,838,376 + PP_4253 0.15 +0.2 4,838,377 - PP_4253 0.15 +1.0 4,838,384 + PP_4253 0.16 -0.7 4,838,384 + PP_4253 0.16 +0.6 4,838,451 - -0.6 4,838,463 - PP_4253 0.24 +1.8 4,839,010 + PP_4253 0.82 -0.2 4,839,014 + PP_4253 0.82 +0.4
Or see this region's nucleotide sequence