Strain Fitness in Pseudomonas putida KT2440 around PP_4063

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
4,585,225	+		PP_4060	0.82	+0.5
4,585,226	-		PP_4060	0.82	-0.3
4,585,226	-		PP_4060	0.82	+0.4
4,585,249	+		PP_4060	0.83	-0.2
4,585,250	-		PP_4060	0.83	+0.4
4,585,250	-		PP_4060	0.83	-0.7
4,585,250	-		PP_4060	0.83	-0.9
4,585,250	-		PP_4060	0.83	-0.2
4,585,280	+		PP_4060	0.85	+0.6
4,585,429	+				+0.4
4,585,646	-				+0.6
4,585,684	-				+0.8
4,585,720	-				+0.5
4,585,720	-				-1.3
4,585,720	-				-0.3
4,585,720	-				-0.3
4,585,915	+				+1.1
4,585,916	-				+0.2
4,585,916	-				+0.2
4,586,090	-				+0.5
4,586,090	-				-0.0
4,586,218	-				-0.9
4,586,234	+				-0.4
4,586,234	+				+0.3
4,586,235	-				-0.1
4,586,235	-				+0.4
4,586,235	-				+0.9
4,586,236	+				+0.4
4,586,236	+				-0.0
4,586,237	-				+0.6
4,586,237	-				+0.3
4,586,238	+				-1.0
4,586,238	+				+0.5
4,586,350	-		PP_4063	0.13	-0.4
4,586,487	+		PP_4063	0.21	+1.1
4,586,488	-		PP_4063	0.21	+0.5
4,586,595	+		PP_4063	0.28	-0.5
4,586,767	-		PP_4063	0.38	-0.2
4,586,767	-		PP_4063	0.38	-0.3
4,586,833	+		PP_4063	0.42	-0.6
4,586,834	-		PP_4063	0.42	-0.7
4,586,834	-		PP_4063	0.42	-0.3
4,586,928	+		PP_4063	0.47	+0.7
4,586,968	+		PP_4063	0.50	+0.3
4,586,968	+		PP_4063	0.50	+3.0
4,586,968	+		PP_4063	0.50	-1.1
4,586,968	+		PP_4063	0.50	-0.9
4,586,998	-		PP_4063	0.51	-0.3
4,587,060	+		PP_4063	0.55	-0.2
4,587,060	+		PP_4063	0.55	+1.1
4,587,060	+		PP_4063	0.55	+1.0
4,587,061	-		PP_4063	0.55	+0.5
4,587,144	+		PP_4063	0.60	-1.6
4,587,144	+		PP_4063	0.60	+0.2
4,587,144	+		PP_4063	0.60	-0.6
4,587,144	+		PP_4063	0.60	+0.1
4,587,145	-		PP_4063	0.60	-0.3
4,587,145	-		PP_4063	0.60	+0.9
4,587,145	-		PP_4063	0.60	-0.4
4,587,192	+		PP_4063	0.63	+0.5
4,587,421	-		PP_4063	0.77	+0.4
4,587,483	+		PP_4063	0.80	+0.4
4,587,484	-		PP_4063	0.80	+0.2
4,587,484	-		PP_4063	0.80	-0.5
4,587,645	-		PP_4063	0.90	+0.9
4,587,645	-		PP_4063	0.90	-0.3
4,587,796	+				+1.4
4,587,797	-				-0.1
4,587,798	+				-1.1
4,587,798	+				+0.8
4,587,798	+				-1.7
4,587,799	-				+0.5
4,587,864	+				-0.8
4,587,864	+				-0.2
4,587,865	-				+0.6
4,588,023	+				+0.3
4,588,024	-				+0.9
4,588,024	-				+2.4
4,588,046	+				+0.2
4,588,095	+				+0.5
4,588,095	+				-0.5
4,588,095	+				+0.4
4,588,095	+				-0.2
4,588,096	-				-0.9
4,588,096	-				-1.8
4,588,326	-		PP_4064	0.16	-1.2
4,588,326	-		PP_4064	0.16	-0.0
4,588,347	-		PP_4064	0.18	-0.5
4,588,410	-		PP_4064	0.24	-1.3
4,588,592	+		PP_4064	0.39	-1.1
4,588,593	-		PP_4064	0.39	-0.8
4,588,593	-		PP_4064	0.39	-0.2
4,588,593	-		PP_4064	0.39	-0.7
4,588,646	+		PP_4064	0.44	-1.5
4,588,646	+		PP_4064	0.44	-1.3
4,588,646	+		PP_4064	0.44	+1.1
4,588,647	-		PP_4064	0.44	-2.9
4,588,647	-		PP_4064	0.44	-1.6
4,588,647	-		PP_4064	0.44	-1.1
4,588,647	-		PP_4064	0.44	+0.6