Strain Fitness in Pseudomonas putida KT2440 around PP_4038

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
4,549,690	-		PP_4037	0.31	-0.5
4,549,804	+		PP_4037	0.39	-0.8
4,549,805	-		PP_4037	0.40	-0.9
4,549,837	+		PP_4037	0.42	-1.3
4,549,837	+		PP_4037	0.42	-2.6
4,549,837	+		PP_4037	0.42	-0.1
4,549,837	+		PP_4037	0.42	+0.9
4,549,838	-		PP_4037	0.42	-0.2
4,549,942	+		PP_4037	0.50	+0.7
4,549,942	+		PP_4037	0.50	-0.7
4,549,943	-		PP_4037	0.50	-1.8
4,549,988	+		PP_4037	0.53	+0.7
4,549,988	+		PP_4037	0.53	+0.1
4,549,989	-		PP_4037	0.53	-0.8
4,549,989	-		PP_4037	0.53	+0.0
4,550,035	+		PP_4037	0.56	+0.2
4,550,035	+		PP_4037	0.56	-1.0
4,550,036	-		PP_4037	0.56	+0.1
4,550,036	-		PP_4037	0.56	-1.5
4,550,036	-		PP_4037	0.56	-1.1
4,550,036	-		PP_4037	0.56	-0.4
4,550,176	+		PP_4037	0.67	+0.1
4,550,177	-		PP_4037	0.67	-0.1
4,550,243	+		PP_4037	0.72	-0.2
4,550,243	+		PP_4037	0.72	+0.4
4,550,243	+		PP_4037	0.72	+0.4
4,550,244	-		PP_4037	0.72	+0.0
4,550,512	+				-0.6
4,550,512	+				+0.3
4,550,513	-				+1.1
4,550,629	+				+0.1
4,550,629	+				+0.6
4,550,629	+				-0.8
4,550,630	-				+1.1
4,550,647	-				-0.3
4,550,651	+				+0.6
4,550,651	+				-0.9
4,550,651	+				-2.8
4,550,651	+				-0.9
4,550,651	+				-1.6
4,550,652	-				+0.9
4,550,652	-				-1.2
4,550,716	+				-1.2
4,550,716	+				+0.9
4,550,716	+				-0.7
4,550,716	+				-0.5
4,550,717	-				+0.6
4,550,821	+		PP_4038	0.15	+0.2
4,550,821	+		PP_4038	0.15	+0.4
4,550,840	+		PP_4038	0.16	+1.3
4,550,856	+		PP_4038	0.18	+1.0
4,550,967	-		PP_4038	0.26	-0.8
4,550,967	-		PP_4038	0.26	-2.5
4,551,051	+		PP_4038	0.33	-1.4
4,551,052	-		PP_4038	0.33	-2.1
4,551,098	-		PP_4038	0.37	-0.7
4,551,130	+		PP_4038	0.39	-1.6
4,551,131	-		PP_4038	0.39	-2.9
4,551,507	+		PP_4038	0.69	-1.9
4,551,754	+		PP_4038	0.88	+0.5
4,551,754	+		PP_4038	0.88	-0.6
4,551,754	+		PP_4038	0.88	+0.4
4,551,755	-		PP_4038	0.88	+1.0
4,551,755	-		PP_4038	0.88	-1.3
4,551,755	-		PP_4038	0.88	+0.5
4,551,779	+				-0.5
4,551,780	-				+0.3
4,551,780	-				+0.1
4,551,786	+				-0.5
4,551,787	-				-0.3
4,552,003	-				+0.5
4,552,211	+		PP_4039	0.24	+0.2
4,552,212	-		PP_4039	0.24	-0.5
4,552,212	-		PP_4039	0.24	+0.9
4,552,212	-		PP_4039	0.24	-0.3
4,552,212	-		PP_4039	0.24	-1.0
4,552,236	+		PP_4039	0.29	-0.9
4,552,236	+		PP_4039	0.29	-0.4
4,552,236	+		PP_4039	0.29	-1.3
4,552,236	+		PP_4039	0.29	+1.4
4,552,236	+		PP_4039	0.29	-0.4
4,552,236	+		PP_4039	0.29	-0.0
4,552,236	+		PP_4039	0.29	+0.5
4,552,237	-		PP_4039	0.29	+0.1
4,552,237	-		PP_4039	0.29	-1.1
4,552,238	+		PP_4039	0.29	-1.5
4,552,238	+		PP_4039	0.29	-2.4
4,552,238	+		PP_4039	0.29	+2.2
4,552,238	+		PP_4039	0.29	+1.3
4,552,238	+		PP_4039	0.29	-0.3
4,552,238	+		PP_4039	0.29	-0.3
4,552,238	+				+2.0
4,552,238	+		PP_4039	0.29	+0.3
4,552,239	-		PP_4039	0.29	+0.2
4,552,239	-		PP_4039	0.29	-0.9
4,552,239	-		PP_4039	0.29	+1.0
4,552,239	-		PP_4039	0.29	-0.8
4,552,269	+		PP_4039	0.35	+0.2
4,552,269	+		PP_4039	0.35	+0.4
4,552,439	+		PP_4039	0.67	-0.5
4,552,556	+				+0.3
4,552,556	+				-0.3
4,552,557	-				+0.5
4,552,557	-				-1.0
4,552,557	-				+0.8
4,552,557	-				-1.3
4,552,557	-				+0.4
4,552,560	-				-0.3
4,552,560	-				-0.1
4,552,670	+				-1.1
4,552,854	+		PP_4040	0.41	-0.6
4,552,855	-		PP_4040	0.42	+0.4