Strain Fitness in Pseudomonas putida KT2440 around PP_3707

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
4,227,800	+				+0.4
4,227,801	-				-0.1
4,227,810	+				+0.5
4,227,836	-				+1.5
4,227,879	-				+0.1
4,227,882	+				+0.3
4,227,949	-		PP_5624	0.23	+0.9
4,228,169	+		PP_5624	0.78	+0.5
4,228,170	-		PP_5624	0.78	-1.2
4,228,172	+		PP_5624	0.79	+1.2
4,228,172	+		PP_5624	0.79	-1.7
4,228,173	-		PP_5624	0.79	+0.4
4,228,173	-		PP_5624	0.79	+0.9
4,228,191	+		PP_5624	0.83	-1.0
4,228,191	+		PP_5624	0.83	+0.2
4,228,192	-		PP_5624	0.84	-2.3
4,228,192	-		PP_5624	0.84	-1.9
4,228,225	-				+0.7
4,228,225	-				+0.6
4,228,273	+				+0.5
4,228,274	-				-0.7
4,228,286	+				+0.3
4,228,287	-				-0.1
4,228,289	+				-0.4
4,228,289	+				-2.1
4,228,289	+				+0.8
4,228,289	+				+0.2
4,228,289	+				-0.3
4,228,289	+				-1.9
4,228,289	+				-0.4
4,228,290	-				-0.2
4,228,290	-				+0.1
4,228,290	-				-0.2
4,228,290	-				-0.1
4,228,319	+				-0.0
4,228,320	-				-0.4
4,228,320	-				+1.5
4,228,327	+				-0.8
4,228,378	-				-1.9
4,228,378	-				+0.3
4,228,416	+				-0.9
4,228,422	+				-1.3
4,228,422	+				+0.4
4,228,438	+				+0.1
4,228,439	-				+0.2
4,228,447	+				-0.8
4,228,490	-				+0.2
4,228,630	-				+0.1
4,228,634	+				-0.7
4,228,651	-				+0.2
4,228,666	-				+0.6
4,228,670	-				+0.6
4,228,864	+				-0.8
4,228,864	+				-0.7
4,228,888	-				+0.1
4,228,888	-				+0.0
4,228,981	-		PP_3707	0.13	-0.5
4,229,126	+		PP_3707	0.24	-1.3
4,229,127	-		PP_3707	0.24	-0.3
4,229,138	-		PP_3707	0.24	-1.9
4,229,170	-		PP_3707	0.27	-1.1
4,229,482	-		PP_3707	0.49	-0.1
4,229,511	-		PP_3707	0.51	+0.1
4,229,940	+		PP_3707	0.81	+0.5
4,230,026	-		PP_3707	0.87	-0.6
4,230,028	-		PP_3707	0.87	-0.7
4,230,174	-				-2.6
4,230,186	+				-0.1
4,230,186	+				-0.2
4,230,186	+				-0.3
4,230,252	+				-1.3
4,230,252	+				+0.0
4,230,253	-				+0.4
4,230,253	-				+1.9
4,230,257	-				+0.0
4,230,257	-				+0.3
4,230,257	-				+0.1
4,230,265	+				-1.0
4,230,266	-				+0.2
4,230,379	-				+0.9
4,230,379	-		PP_3708	0.15	-0.4
4,230,379	-		PP_3708	0.15	-0.5
4,230,379	-		PP_3708	0.15	+0.5
4,230,383	-		PP_3708	0.15	-0.4
4,230,383	-		PP_3708	0.15	+1.3
4,230,415	-		PP_3708	0.18	+1.6
4,230,445	+		PP_3708	0.21	+0.0
4,230,446	-		PP_3708	0.21	-1.7
4,230,446	-		PP_3708	0.21	+0.8
4,230,446	-		PP_3708	0.21	-1.6
4,230,477	+		PP_3708	0.24	-0.7
4,230,477	+		PP_3708	0.24	-0.3
4,230,478	-		PP_3708	0.24	+2.3
4,230,478	-		PP_3708	0.24	-0.3
4,230,478	-		PP_3708	0.24	-1.3
4,230,500	-		PP_3708	0.26	+1.3
4,230,510	+		PP_3708	0.27	-1.1
4,230,521	-		PP_3708	0.28	+0.1
4,230,585	+		PP_3708	0.34	-0.6
4,230,630	+		PP_3708	0.39	+0.0
4,230,631	-		PP_3708	0.39	+0.3
4,230,837	-		PP_3708	0.59	-0.1
4,230,837	-		PP_3708	0.59	+0.5
4,230,856	-		PP_3708	0.61	+0.0
4,230,929	+		PP_3708	0.68	-0.0
4,230,929	+		PP_3708	0.68	+1.0
4,230,929	+		PP_3708	0.68	+0.7
4,230,930	-		PP_3708	0.68	+0.5
4,230,933	+		PP_3708	0.68	-0.0
4,230,933	+		PP_3708	0.68	+0.7
4,230,938	+		PP_3708	0.68	-0.5
4,230,969	-		PP_3708	0.71	-0.9
4,231,038	+		PP_3708	0.78	-0.9
4,231,038	+		PP_3708	0.78	-1.1
4,231,118	+		PP_3708	0.86	-0.4
4,231,123	-		PP_3708	0.86	-1.3
4,231,123	-		PP_3708	0.86	-1.8
4,231,201	-				-1.2
4,231,201	-				-0.6