Experiment: Isobutyl alcohol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3706 and PP_5624 are separated by 14 nucleotides PP_5624 and PP_3707 are separated by 535 nucleotides PP_3707 and PP_3708 are separated by 20 nucleotides
PP_3706: PP_3706 - conserved protein of unknown function, at 4,226,884 to 4,227,843
_3706
PP_5624: PP_5624 - conserved protein of unknown function, at 4,227,858 to 4,228,256
_5624
PP_3707: PP_3707 - conserved protein of unknown function, at 4,228,792 to 4,230,207
_3707
PP_3708: PP_3708 - conserved protein of unknown function, at 4,230,228 to 4,231,265
_3708
Position (kb)
4228
4229
4230
4231 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4227.800 kb on + strand at 4227.801 kb on - strand at 4227.810 kb on + strand at 4227.836 kb on - strand at 4227.879 kb on - strand at 4227.882 kb on + strand at 4227.949 kb on - strand, within PP_5624 at 4228.169 kb on + strand, within PP_5624 at 4228.170 kb on - strand, within PP_5624 at 4228.172 kb on + strand, within PP_5624 at 4228.172 kb on + strand, within PP_5624 at 4228.173 kb on - strand, within PP_5624 at 4228.173 kb on - strand, within PP_5624 at 4228.191 kb on + strand, within PP_5624 at 4228.191 kb on + strand, within PP_5624 at 4228.192 kb on - strand, within PP_5624 at 4228.192 kb on - strand, within PP_5624 at 4228.225 kb on - strand at 4228.225 kb on - strand at 4228.273 kb on + strand at 4228.274 kb on - strand at 4228.286 kb on + strand at 4228.287 kb on - strand at 4228.289 kb on + strand at 4228.289 kb on + strand at 4228.289 kb on + strand at 4228.289 kb on + strand at 4228.289 kb on + strand at 4228.289 kb on + strand at 4228.289 kb on + strand at 4228.290 kb on - strand at 4228.290 kb on - strand at 4228.290 kb on - strand at 4228.290 kb on - strand at 4228.319 kb on + strand at 4228.320 kb on - strand at 4228.320 kb on - strand at 4228.327 kb on + strand at 4228.378 kb on - strand at 4228.378 kb on - strand at 4228.416 kb on + strand at 4228.422 kb on + strand at 4228.422 kb on + strand at 4228.438 kb on + strand at 4228.439 kb on - strand at 4228.447 kb on + strand at 4228.490 kb on - strand at 4228.630 kb on - strand at 4228.634 kb on + strand at 4228.651 kb on - strand at 4228.666 kb on - strand at 4228.670 kb on - strand at 4228.864 kb on + strand at 4228.864 kb on + strand at 4228.888 kb on - strand at 4228.888 kb on - strand at 4228.981 kb on - strand, within PP_3707 at 4229.126 kb on + strand, within PP_3707 at 4229.127 kb on - strand, within PP_3707 at 4229.138 kb on - strand, within PP_3707 at 4229.170 kb on - strand, within PP_3707 at 4229.482 kb on - strand, within PP_3707 at 4229.511 kb on - strand, within PP_3707 at 4229.940 kb on + strand, within PP_3707 at 4230.026 kb on - strand, within PP_3707 at 4230.028 kb on - strand, within PP_3707 at 4230.174 kb on - strand at 4230.186 kb on + strand at 4230.186 kb on + strand at 4230.186 kb on + strand at 4230.252 kb on + strand at 4230.252 kb on + strand at 4230.253 kb on - strand at 4230.253 kb on - strand at 4230.257 kb on - strand at 4230.257 kb on - strand at 4230.257 kb on - strand at 4230.265 kb on + strand at 4230.266 kb on - strand at 4230.379 kb on - strand at 4230.379 kb on - strand, within PP_3708 at 4230.379 kb on - strand, within PP_3708 at 4230.379 kb on - strand, within PP_3708 at 4230.383 kb on - strand, within PP_3708 at 4230.383 kb on - strand, within PP_3708 at 4230.415 kb on - strand, within PP_3708 at 4230.445 kb on + strand, within PP_3708 at 4230.446 kb on - strand, within PP_3708 at 4230.446 kb on - strand, within PP_3708 at 4230.446 kb on - strand, within PP_3708 at 4230.477 kb on + strand, within PP_3708 at 4230.477 kb on + strand, within PP_3708 at 4230.478 kb on - strand, within PP_3708 at 4230.478 kb on - strand, within PP_3708 at 4230.478 kb on - strand, within PP_3708 at 4230.500 kb on - strand, within PP_3708 at 4230.510 kb on + strand, within PP_3708 at 4230.521 kb on - strand, within PP_3708 at 4230.585 kb on + strand, within PP_3708 at 4230.630 kb on + strand, within PP_3708 at 4230.631 kb on - strand, within PP_3708 at 4230.837 kb on - strand, within PP_3708 at 4230.837 kb on - strand, within PP_3708 at 4230.856 kb on - strand, within PP_3708 at 4230.929 kb on + strand, within PP_3708 at 4230.929 kb on + strand, within PP_3708 at 4230.929 kb on + strand, within PP_3708 at 4230.930 kb on - strand, within PP_3708 at 4230.933 kb on + strand, within PP_3708 at 4230.933 kb on + strand, within PP_3708 at 4230.938 kb on + strand, within PP_3708 at 4230.969 kb on - strand, within PP_3708 at 4231.038 kb on + strand, within PP_3708 at 4231.038 kb on + strand, within PP_3708 at 4231.118 kb on + strand, within PP_3708 at 4231.123 kb on - strand, within PP_3708 at 4231.123 kb on - strand, within PP_3708 at 4231.201 kb on - strand at 4231.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Isobutyl alcohol 0.6 vol% remove 4,227,800 + +0.4 4,227,801 - -0.1 4,227,810 + +0.5 4,227,836 - +1.5 4,227,879 - +0.1 4,227,882 + +0.3 4,227,949 - PP_5624 0.23 +0.9 4,228,169 + PP_5624 0.78 +0.5 4,228,170 - PP_5624 0.78 -1.2 4,228,172 + PP_5624 0.79 +1.2 4,228,172 + PP_5624 0.79 -1.7 4,228,173 - PP_5624 0.79 +0.4 4,228,173 - PP_5624 0.79 +0.9 4,228,191 + PP_5624 0.83 -1.0 4,228,191 + PP_5624 0.83 +0.2 4,228,192 - PP_5624 0.84 -2.3 4,228,192 - PP_5624 0.84 -1.9 4,228,225 - +0.7 4,228,225 - +0.6 4,228,273 + +0.5 4,228,274 - -0.7 4,228,286 + +0.3 4,228,287 - -0.1 4,228,289 + -0.4 4,228,289 + -2.1 4,228,289 + +0.8 4,228,289 + +0.2 4,228,289 + -0.3 4,228,289 + -1.9 4,228,289 + -0.4 4,228,290 - -0.2 4,228,290 - +0.1 4,228,290 - -0.2 4,228,290 - -0.1 4,228,319 + -0.0 4,228,320 - -0.4 4,228,320 - +1.5 4,228,327 + -0.8 4,228,378 - -1.9 4,228,378 - +0.3 4,228,416 + -0.9 4,228,422 + -1.3 4,228,422 + +0.4 4,228,438 + +0.1 4,228,439 - +0.2 4,228,447 + -0.8 4,228,490 - +0.2 4,228,630 - +0.1 4,228,634 + -0.7 4,228,651 - +0.2 4,228,666 - +0.6 4,228,670 - +0.6 4,228,864 + -0.8 4,228,864 + -0.7 4,228,888 - +0.1 4,228,888 - +0.0 4,228,981 - PP_3707 0.13 -0.5 4,229,126 + PP_3707 0.24 -1.3 4,229,127 - PP_3707 0.24 -0.3 4,229,138 - PP_3707 0.24 -1.9 4,229,170 - PP_3707 0.27 -1.1 4,229,482 - PP_3707 0.49 -0.1 4,229,511 - PP_3707 0.51 +0.1 4,229,940 + PP_3707 0.81 +0.5 4,230,026 - PP_3707 0.87 -0.6 4,230,028 - PP_3707 0.87 -0.7 4,230,174 - -2.6 4,230,186 + -0.1 4,230,186 + -0.2 4,230,186 + -0.3 4,230,252 + -1.3 4,230,252 + +0.0 4,230,253 - +0.4 4,230,253 - +1.9 4,230,257 - +0.0 4,230,257 - +0.3 4,230,257 - +0.1 4,230,265 + -1.0 4,230,266 - +0.2 4,230,379 - +0.9 4,230,379 - PP_3708 0.15 -0.4 4,230,379 - PP_3708 0.15 -0.5 4,230,379 - PP_3708 0.15 +0.5 4,230,383 - PP_3708 0.15 -0.4 4,230,383 - PP_3708 0.15 +1.3 4,230,415 - PP_3708 0.18 +1.6 4,230,445 + PP_3708 0.21 +0.0 4,230,446 - PP_3708 0.21 -1.7 4,230,446 - PP_3708 0.21 +0.8 4,230,446 - PP_3708 0.21 -1.6 4,230,477 + PP_3708 0.24 -0.7 4,230,477 + PP_3708 0.24 -0.3 4,230,478 - PP_3708 0.24 +2.3 4,230,478 - PP_3708 0.24 -0.3 4,230,478 - PP_3708 0.24 -1.3 4,230,500 - PP_3708 0.26 +1.3 4,230,510 + PP_3708 0.27 -1.1 4,230,521 - PP_3708 0.28 +0.1 4,230,585 + PP_3708 0.34 -0.6 4,230,630 + PP_3708 0.39 +0.0 4,230,631 - PP_3708 0.39 +0.3 4,230,837 - PP_3708 0.59 -0.1 4,230,837 - PP_3708 0.59 +0.5 4,230,856 - PP_3708 0.61 +0.0 4,230,929 + PP_3708 0.68 -0.0 4,230,929 + PP_3708 0.68 +1.0 4,230,929 + PP_3708 0.68 +0.7 4,230,930 - PP_3708 0.68 +0.5 4,230,933 + PP_3708 0.68 -0.0 4,230,933 + PP_3708 0.68 +0.7 4,230,938 + PP_3708 0.68 -0.5 4,230,969 - PP_3708 0.71 -0.9 4,231,038 + PP_3708 0.78 -0.9 4,231,038 + PP_3708 0.78 -1.1 4,231,118 + PP_3708 0.86 -0.4 4,231,123 - PP_3708 0.86 -1.3 4,231,123 - PP_3708 0.86 -1.8 4,231,201 - -1.2 4,231,201 - -0.6
Or see this region's nucleotide sequence