Strain Fitness in Pseudomonas putida KT2440 around PP_3621

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
4,115,898	-		PP_3620	0.69	-0.3
4,115,974	-		PP_3620	0.72	-1.3
4,115,982	+		PP_3620	0.72	-1.1
4,115,983	-		PP_3620	0.72	-0.5
4,115,983	-		PP_3620	0.72	+0.4
4,115,983	-		PP_3620	0.72	-1.0
4,116,010	+		PP_3620	0.74	-0.2
4,116,010	+		PP_3620	0.74	+0.3
4,116,140	+		PP_3620	0.80	-1.8
4,116,140	+		PP_3620	0.80	-0.4
4,116,140	+		PP_3620	0.80	-1.0
4,116,140	+		PP_3620	0.80	-0.5
4,116,140	+		PP_3620	0.80	-1.0
4,116,140	+		PP_3620	0.80	-1.3
4,116,140	+		PP_3620	0.80	-0.2
4,116,140	+		PP_3620	0.80	-1.1
4,116,140	+		PP_3620	0.80	+0.1
4,116,140	+		PP_3620	0.80	+0.1
4,116,140	+		PP_3620	0.80	+0.2
4,116,140	+		PP_3620	0.80	-0.2
4,116,141	-		PP_3620	0.80	-1.3
4,116,141	-		PP_3620	0.80	+0.5
4,116,141	-		PP_3620	0.80	+0.4
4,116,141	-		PP_3620	0.80	-0.6
4,116,141	-		PP_3620	0.80	-0.6
4,116,141	-		PP_3620	0.80	-0.3
4,116,141	-		PP_3620	0.80	-0.8
4,116,141	-		PP_3620	0.80	-0.8
4,116,141	-		PP_3620	0.80	+0.4
4,116,141	-		PP_3620	0.80	+0.9
4,116,339	-		PP_3620	0.89	-0.3
4,116,397	-				-1.0
4,116,413	+				-0.5
4,116,414	-				-0.7
4,116,428	+				+0.6
4,116,505	-				-1.3
4,116,593	+				+0.3
4,116,704	-				+0.1
4,116,717	-				-0.8
4,116,717	-				+1.2
4,116,775	+				-0.5
4,116,801	+				-1.2
4,116,801	+				+0.8
4,116,801	+				+0.1
4,116,802	-				+0.5
4,116,802	-				+0.7
4,116,817	-				+0.8
4,116,863	+				+2.7
4,116,883	+				+0.3
4,116,883	+				+0.4
4,116,884	-				+0.5
4,116,884	-				+0.1
4,116,958	+		PP_3621	0.22	-0.8
4,116,958	+		PP_3621	0.22	-0.9
4,116,958	+		PP_3621	0.22	-0.2
4,116,958	+		PP_3621	0.22	-1.1
4,116,958	+		PP_3621	0.22	-0.1
4,116,959	-		PP_3621	0.23	+0.3
4,116,959	-		PP_3621	0.23	+0.4
4,117,258	+		PP_3621	0.88	-1.4
4,117,258	+		PP_3621	0.88	+0.1
4,117,258	+		PP_3621	0.88	-0.8
4,117,259	-		PP_3621	0.88	-0.9
4,117,423	+				+0.2
4,117,423	+				+0.6
4,117,423	+				+0.1
4,117,559	+		PP_3622	0.11	+0.1
4,117,559	+		PP_3622	0.11	+0.1
4,117,560	-		PP_3622	0.11	+0.1
4,117,669	-		PP_3622	0.16	+1.0
4,117,669	-		PP_3622	0.16	-1.0
4,117,728	+		PP_3622	0.18	+0.2
4,117,729	-		PP_3622	0.19	-0.6
4,117,802	-		PP_3622	0.22	+0.1
4,117,820	+				-0.2
4,117,832	+		PP_3622	0.23	-0.2
4,117,837	+		PP_3622	0.23	-0.3
4,117,837	+		PP_3622	0.23	-1.6
4,117,837	+		PP_3622	0.23	-0.1
4,117,837	+		PP_3622	0.23	+0.5
4,117,837	+		PP_3622	0.23	-0.1
4,117,837	+		PP_3622	0.23	-2.5
4,117,837	+		PP_3622	0.23	-0.2
4,117,837	+		PP_3622	0.23	-0.2
4,117,837	+		PP_3622	0.23	-1.0
4,117,838	-		PP_3622	0.23	-0.4
4,117,838	-		PP_3622	0.23	+0.1
4,117,838	-		PP_3622	0.23	-1.1
4,117,838	-		PP_3622	0.23	+0.8
4,117,838	-		PP_3622	0.23	-0.1
4,117,838	-		PP_3622	0.23	-0.3
4,117,840	+		PP_3622	0.23	-1.5
4,117,840	+		PP_3622	0.23	+0.2
4,117,840	+		PP_3622	0.23	+0.3
4,117,840	+		PP_3622	0.23	-0.3
4,117,840	+		PP_3622	0.23	+0.8
4,117,840	+		PP_3622	0.23	+1.1
4,117,840	+		PP_3622	0.23	-0.2
4,117,841	-		PP_3622	0.23	-1.4
4,117,841	-		PP_3622	0.23	+0.6
4,117,844	+		PP_3622	0.24	-1.0
4,117,845	-		PP_3622	0.24	+0.6
4,117,969	+		PP_3622	0.29	+0.0
4,118,013	+		PP_3622	0.31	+0.4
4,118,014	-		PP_3622	0.31	+0.6
4,118,014	-		PP_3622	0.31	-0.2
4,118,132	-		PP_3622	0.36	+0.8
4,118,132	-		PP_3622	0.36	+0.6
4,118,132	-		PP_3622	0.36	-0.2
4,118,132	-		PP_3622	0.36	-1.0