Experiment: Isobutyl alcohol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3620 and PP_3621 are separated by 270 nucleotides PP_3621 and PP_3622 overlap by 1 nucleotides
PP_3620: PP_3620 - cofactor of beta-methylthiolation of ribosomal protein S12, at 4,114,399 to 4,116,585
_3620
PP_3621: PP_3621 - vanillin dehydrogenase, iorA-like component (from data) , at 4,116,856 to 4,117,311
_3621
PP_3622: PP_3622 - vanillin dehydrogenase, iorB-like component (from data) , at 4,117,311 to 4,119,566
_3622
Position (kb)
4116
4117
4118 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4115.898 kb on - strand, within PP_3620 at 4115.974 kb on - strand, within PP_3620 at 4115.982 kb on + strand, within PP_3620 at 4115.983 kb on - strand, within PP_3620 at 4115.983 kb on - strand, within PP_3620 at 4115.983 kb on - strand, within PP_3620 at 4116.010 kb on + strand, within PP_3620 at 4116.010 kb on + strand, within PP_3620 at 4116.140 kb on + strand, within PP_3620 at 4116.140 kb on + strand, within PP_3620 at 4116.140 kb on + strand, within PP_3620 at 4116.140 kb on + strand, within PP_3620 at 4116.140 kb on + strand, within PP_3620 at 4116.140 kb on + strand, within PP_3620 at 4116.140 kb on + strand, within PP_3620 at 4116.140 kb on + strand, within PP_3620 at 4116.140 kb on + strand, within PP_3620 at 4116.140 kb on + strand, within PP_3620 at 4116.140 kb on + strand, within PP_3620 at 4116.140 kb on + strand, within PP_3620 at 4116.141 kb on - strand, within PP_3620 at 4116.141 kb on - strand, within PP_3620 at 4116.141 kb on - strand, within PP_3620 at 4116.141 kb on - strand, within PP_3620 at 4116.141 kb on - strand, within PP_3620 at 4116.141 kb on - strand, within PP_3620 at 4116.141 kb on - strand, within PP_3620 at 4116.141 kb on - strand, within PP_3620 at 4116.141 kb on - strand, within PP_3620 at 4116.141 kb on - strand, within PP_3620 at 4116.339 kb on - strand, within PP_3620 at 4116.397 kb on - strand at 4116.413 kb on + strand at 4116.414 kb on - strand at 4116.428 kb on + strand at 4116.505 kb on - strand at 4116.593 kb on + strand at 4116.704 kb on - strand at 4116.717 kb on - strand at 4116.717 kb on - strand at 4116.775 kb on + strand at 4116.801 kb on + strand at 4116.801 kb on + strand at 4116.801 kb on + strand at 4116.802 kb on - strand at 4116.802 kb on - strand at 4116.817 kb on - strand at 4116.863 kb on + strand at 4116.883 kb on + strand at 4116.883 kb on + strand at 4116.884 kb on - strand at 4116.884 kb on - strand at 4116.958 kb on + strand, within PP_3621 at 4116.958 kb on + strand, within PP_3621 at 4116.958 kb on + strand, within PP_3621 at 4116.958 kb on + strand, within PP_3621 at 4116.958 kb on + strand, within PP_3621 at 4116.959 kb on - strand, within PP_3621 at 4116.959 kb on - strand, within PP_3621 at 4117.258 kb on + strand, within PP_3621 at 4117.258 kb on + strand, within PP_3621 at 4117.258 kb on + strand, within PP_3621 at 4117.259 kb on - strand, within PP_3621 at 4117.423 kb on + strand at 4117.423 kb on + strand at 4117.423 kb on + strand at 4117.559 kb on + strand, within PP_3622 at 4117.559 kb on + strand, within PP_3622 at 4117.560 kb on - strand, within PP_3622 at 4117.669 kb on - strand, within PP_3622 at 4117.669 kb on - strand, within PP_3622 at 4117.728 kb on + strand, within PP_3622 at 4117.729 kb on - strand, within PP_3622 at 4117.802 kb on - strand, within PP_3622 at 4117.820 kb on + strand at 4117.832 kb on + strand, within PP_3622 at 4117.837 kb on + strand, within PP_3622 at 4117.837 kb on + strand, within PP_3622 at 4117.837 kb on + strand, within PP_3622 at 4117.837 kb on + strand, within PP_3622 at 4117.837 kb on + strand, within PP_3622 at 4117.837 kb on + strand, within PP_3622 at 4117.837 kb on + strand, within PP_3622 at 4117.837 kb on + strand, within PP_3622 at 4117.837 kb on + strand, within PP_3622 at 4117.838 kb on - strand, within PP_3622 at 4117.838 kb on - strand, within PP_3622 at 4117.838 kb on - strand, within PP_3622 at 4117.838 kb on - strand, within PP_3622 at 4117.838 kb on - strand, within PP_3622 at 4117.838 kb on - strand, within PP_3622 at 4117.840 kb on + strand, within PP_3622 at 4117.840 kb on + strand, within PP_3622 at 4117.840 kb on + strand, within PP_3622 at 4117.840 kb on + strand, within PP_3622 at 4117.840 kb on + strand, within PP_3622 at 4117.840 kb on + strand, within PP_3622 at 4117.840 kb on + strand, within PP_3622 at 4117.841 kb on - strand, within PP_3622 at 4117.841 kb on - strand, within PP_3622 at 4117.844 kb on + strand, within PP_3622 at 4117.845 kb on - strand, within PP_3622 at 4117.969 kb on + strand, within PP_3622 at 4118.013 kb on + strand, within PP_3622 at 4118.014 kb on - strand, within PP_3622 at 4118.014 kb on - strand, within PP_3622 at 4118.132 kb on - strand, within PP_3622 at 4118.132 kb on - strand, within PP_3622 at 4118.132 kb on - strand, within PP_3622 at 4118.132 kb on - strand, within PP_3622
Per-strain Table
Position Strand Gene LocusTag Fraction Isobutyl alcohol 0.6 vol% remove 4,115,898 - PP_3620 0.69 -0.3 4,115,974 - PP_3620 0.72 -1.3 4,115,982 + PP_3620 0.72 -1.1 4,115,983 - PP_3620 0.72 -0.5 4,115,983 - PP_3620 0.72 +0.4 4,115,983 - PP_3620 0.72 -1.0 4,116,010 + PP_3620 0.74 -0.2 4,116,010 + PP_3620 0.74 +0.3 4,116,140 + PP_3620 0.80 -1.8 4,116,140 + PP_3620 0.80 -0.4 4,116,140 + PP_3620 0.80 -1.0 4,116,140 + PP_3620 0.80 -0.5 4,116,140 + PP_3620 0.80 -1.0 4,116,140 + PP_3620 0.80 -1.3 4,116,140 + PP_3620 0.80 -0.2 4,116,140 + PP_3620 0.80 -1.1 4,116,140 + PP_3620 0.80 +0.1 4,116,140 + PP_3620 0.80 +0.1 4,116,140 + PP_3620 0.80 +0.2 4,116,140 + PP_3620 0.80 -0.2 4,116,141 - PP_3620 0.80 -1.3 4,116,141 - PP_3620 0.80 +0.5 4,116,141 - PP_3620 0.80 +0.4 4,116,141 - PP_3620 0.80 -0.6 4,116,141 - PP_3620 0.80 -0.6 4,116,141 - PP_3620 0.80 -0.3 4,116,141 - PP_3620 0.80 -0.8 4,116,141 - PP_3620 0.80 -0.8 4,116,141 - PP_3620 0.80 +0.4 4,116,141 - PP_3620 0.80 +0.9 4,116,339 - PP_3620 0.89 -0.3 4,116,397 - -1.0 4,116,413 + -0.5 4,116,414 - -0.7 4,116,428 + +0.6 4,116,505 - -1.3 4,116,593 + +0.3 4,116,704 - +0.1 4,116,717 - -0.8 4,116,717 - +1.2 4,116,775 + -0.5 4,116,801 + -1.2 4,116,801 + +0.8 4,116,801 + +0.1 4,116,802 - +0.5 4,116,802 - +0.7 4,116,817 - +0.8 4,116,863 + +2.7 4,116,883 + +0.3 4,116,883 + +0.4 4,116,884 - +0.5 4,116,884 - +0.1 4,116,958 + PP_3621 0.22 -0.8 4,116,958 + PP_3621 0.22 -0.9 4,116,958 + PP_3621 0.22 -0.2 4,116,958 + PP_3621 0.22 -1.1 4,116,958 + PP_3621 0.22 -0.1 4,116,959 - PP_3621 0.23 +0.3 4,116,959 - PP_3621 0.23 +0.4 4,117,258 + PP_3621 0.88 -1.4 4,117,258 + PP_3621 0.88 +0.1 4,117,258 + PP_3621 0.88 -0.8 4,117,259 - PP_3621 0.88 -0.9 4,117,423 + +0.2 4,117,423 + +0.6 4,117,423 + +0.1 4,117,559 + PP_3622 0.11 +0.1 4,117,559 + PP_3622 0.11 +0.1 4,117,560 - PP_3622 0.11 +0.1 4,117,669 - PP_3622 0.16 +1.0 4,117,669 - PP_3622 0.16 -1.0 4,117,728 + PP_3622 0.18 +0.2 4,117,729 - PP_3622 0.19 -0.6 4,117,802 - PP_3622 0.22 +0.1 4,117,820 + -0.2 4,117,832 + PP_3622 0.23 -0.2 4,117,837 + PP_3622 0.23 -0.3 4,117,837 + PP_3622 0.23 -1.6 4,117,837 + PP_3622 0.23 -0.1 4,117,837 + PP_3622 0.23 +0.5 4,117,837 + PP_3622 0.23 -0.1 4,117,837 + PP_3622 0.23 -2.5 4,117,837 + PP_3622 0.23 -0.2 4,117,837 + PP_3622 0.23 -0.2 4,117,837 + PP_3622 0.23 -1.0 4,117,838 - PP_3622 0.23 -0.4 4,117,838 - PP_3622 0.23 +0.1 4,117,838 - PP_3622 0.23 -1.1 4,117,838 - PP_3622 0.23 +0.8 4,117,838 - PP_3622 0.23 -0.1 4,117,838 - PP_3622 0.23 -0.3 4,117,840 + PP_3622 0.23 -1.5 4,117,840 + PP_3622 0.23 +0.2 4,117,840 + PP_3622 0.23 +0.3 4,117,840 + PP_3622 0.23 -0.3 4,117,840 + PP_3622 0.23 +0.8 4,117,840 + PP_3622 0.23 +1.1 4,117,840 + PP_3622 0.23 -0.2 4,117,841 - PP_3622 0.23 -1.4 4,117,841 - PP_3622 0.23 +0.6 4,117,844 + PP_3622 0.24 -1.0 4,117,845 - PP_3622 0.24 +0.6 4,117,969 + PP_3622 0.29 +0.0 4,118,013 + PP_3622 0.31 +0.4 4,118,014 - PP_3622 0.31 +0.6 4,118,014 - PP_3622 0.31 -0.2 4,118,132 - PP_3622 0.36 +0.8 4,118,132 - PP_3622 0.36 +0.6 4,118,132 - PP_3622 0.36 -0.2 4,118,132 - PP_3622 0.36 -1.0
Or see this region's nucleotide sequence