Experiment: Isobutyl alcohol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3579 and PP_3580 are separated by 229 nucleotides PP_3580 and PP_3581 overlap by 4 nucleotides
PP_3579: PP_3579 - conserved membrane protein of unknown function, at 4,061,072 to 4,061,719
_3579
PP_3580: PP_3580 - conserved protein of unknown function, at 4,061,949 to 4,062,254
_3580
PP_3581: PP_3581 - conserved membrane protein of unknown function, at 4,062,251 to 4,064,338
_3581
Position (kb)
4061
4062
4063 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4061.004 kb on + strand at 4061.004 kb on + strand at 4061.005 kb on - strand at 4061.027 kb on - strand at 4061.041 kb on + strand at 4061.041 kb on + strand at 4061.041 kb on + strand at 4061.042 kb on - strand at 4061.042 kb on - strand at 4061.165 kb on - strand, within PP_3579 at 4061.210 kb on + strand, within PP_3579 at 4061.211 kb on - strand, within PP_3579 at 4061.228 kb on + strand, within PP_3579 at 4061.403 kb on - strand, within PP_3579 at 4061.408 kb on + strand, within PP_3579 at 4061.409 kb on - strand, within PP_3579 at 4061.409 kb on - strand, within PP_3579 at 4061.454 kb on + strand, within PP_3579 at 4061.469 kb on - strand, within PP_3579 at 4061.690 kb on - strand at 4061.690 kb on - strand at 4061.690 kb on - strand at 4061.717 kb on + strand at 4061.717 kb on + strand at 4061.783 kb on + strand at 4061.783 kb on + strand at 4061.886 kb on + strand at 4061.909 kb on + strand at 4061.910 kb on - strand at 4061.920 kb on - strand at 4061.920 kb on - strand at 4061.920 kb on - strand at 4061.920 kb on - strand at 4061.976 kb on - strand at 4062.178 kb on + strand, within PP_3580 at 4062.178 kb on + strand, within PP_3580 at 4062.179 kb on - strand, within PP_3580 at 4062.233 kb on + strand at 4062.234 kb on - strand at 4062.253 kb on - strand at 4062.334 kb on - strand at 4062.488 kb on + strand at 4062.559 kb on + strand, within PP_3581 at 4062.656 kb on - strand, within PP_3581 at 4062.978 kb on + strand, within PP_3581 at 4063.110 kb on + strand, within PP_3581 at 4063.110 kb on + strand, within PP_3581 at 4063.110 kb on + strand, within PP_3581 at 4063.110 kb on + strand, within PP_3581 at 4063.110 kb on + strand, within PP_3581 at 4063.110 kb on + strand, within PP_3581 at 4063.111 kb on - strand, within PP_3581 at 4063.111 kb on - strand, within PP_3581 at 4063.111 kb on - strand, within PP_3581 at 4063.111 kb on - strand, within PP_3581 at 4063.111 kb on - strand, within PP_3581 at 4063.111 kb on - strand, within PP_3581 at 4063.111 kb on - strand, within PP_3581 at 4063.167 kb on + strand, within PP_3581
Per-strain Table
Position Strand Gene LocusTag Fraction Isobutyl alcohol 0.6 vol% remove 4,061,004 + +0.6 4,061,004 + +0.2 4,061,005 - +1.1 4,061,027 - +0.8 4,061,041 + +0.9 4,061,041 + -1.4 4,061,041 + -0.7 4,061,042 - +0.6 4,061,042 - -0.6 4,061,165 - PP_3579 0.14 -0.9 4,061,210 + PP_3579 0.21 -0.5 4,061,211 - PP_3579 0.21 -0.6 4,061,228 + PP_3579 0.24 +0.2 4,061,403 - PP_3579 0.51 +0.0 4,061,408 + PP_3579 0.52 -0.8 4,061,409 - PP_3579 0.52 +0.8 4,061,409 - PP_3579 0.52 -0.2 4,061,454 + PP_3579 0.59 -0.2 4,061,469 - PP_3579 0.61 +0.5 4,061,690 - -0.3 4,061,690 - -2.6 4,061,690 - -0.3 4,061,717 + -0.5 4,061,717 + +0.4 4,061,783 + -1.2 4,061,783 + -1.2 4,061,886 + -1.7 4,061,909 + -0.1 4,061,910 - +1.6 4,061,920 - +0.8 4,061,920 - -1.3 4,061,920 - +1.0 4,061,920 - -0.5 4,061,976 - +0.3 4,062,178 + PP_3580 0.75 -2.0 4,062,178 + PP_3580 0.75 -0.1 4,062,179 - PP_3580 0.75 -2.9 4,062,233 + +0.7 4,062,234 - +1.5 4,062,253 - -0.5 4,062,334 - +0.0 4,062,488 + +0.8 4,062,559 + PP_3581 0.15 -1.1 4,062,656 - PP_3581 0.19 -0.7 4,062,978 + PP_3581 0.35 -0.8 4,063,110 + PP_3581 0.41 +0.1 4,063,110 + PP_3581 0.41 -0.6 4,063,110 + PP_3581 0.41 +0.1 4,063,110 + PP_3581 0.41 -0.9 4,063,110 + PP_3581 0.41 +0.5 4,063,110 + PP_3581 0.41 -1.5 4,063,111 - PP_3581 0.41 +0.1 4,063,111 - PP_3581 0.41 -1.3 4,063,111 - PP_3581 0.41 -0.2 4,063,111 - PP_3581 0.41 +0.8 4,063,111 - PP_3581 0.41 +0.7 4,063,111 - PP_3581 0.41 +0.1 4,063,111 - PP_3581 0.41 -1.6 4,063,167 + PP_3581 0.44 +0.3
Or see this region's nucleotide sequence