Strain Fitness in Pseudomonas putida KT2440 around PP_3580

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
4,061,004	+				+0.6
4,061,004	+				+0.2
4,061,005	-				+1.1
4,061,027	-				+0.8
4,061,041	+				+0.9
4,061,041	+				-1.4
4,061,041	+				-0.7
4,061,042	-				+0.6
4,061,042	-				-0.6
4,061,165	-		PP_3579	0.14	-0.9
4,061,210	+		PP_3579	0.21	-0.5
4,061,211	-		PP_3579	0.21	-0.6
4,061,228	+		PP_3579	0.24	+0.2
4,061,403	-		PP_3579	0.51	+0.0
4,061,408	+		PP_3579	0.52	-0.8
4,061,409	-		PP_3579	0.52	+0.8
4,061,409	-		PP_3579	0.52	-0.2
4,061,454	+		PP_3579	0.59	-0.2
4,061,469	-		PP_3579	0.61	+0.5
4,061,690	-				-0.3
4,061,690	-				-2.6
4,061,690	-				-0.3
4,061,717	+				-0.5
4,061,717	+				+0.4
4,061,783	+				-1.2
4,061,783	+				-1.2
4,061,886	+				-1.7
4,061,909	+				-0.1
4,061,910	-				+1.6
4,061,920	-				+0.8
4,061,920	-				-1.3
4,061,920	-				+1.0
4,061,920	-				-0.5
4,061,976	-				+0.3
4,062,178	+		PP_3580	0.75	-2.0
4,062,178	+		PP_3580	0.75	-0.1
4,062,179	-		PP_3580	0.75	-2.9
4,062,233	+				+0.7
4,062,234	-				+1.5
4,062,253	-				-0.5
4,062,334	-				+0.0
4,062,488	+				+0.8
4,062,559	+		PP_3581	0.15	-1.1
4,062,656	-		PP_3581	0.19	-0.7
4,062,978	+		PP_3581	0.35	-0.8
4,063,110	+		PP_3581	0.41	+0.1
4,063,110	+		PP_3581	0.41	-0.6
4,063,110	+		PP_3581	0.41	+0.1
4,063,110	+		PP_3581	0.41	-0.9
4,063,110	+		PP_3581	0.41	+0.5
4,063,110	+		PP_3581	0.41	-1.5
4,063,111	-		PP_3581	0.41	+0.1
4,063,111	-		PP_3581	0.41	-1.3
4,063,111	-		PP_3581	0.41	-0.2
4,063,111	-		PP_3581	0.41	+0.8
4,063,111	-		PP_3581	0.41	+0.7
4,063,111	-		PP_3581	0.41	+0.1
4,063,111	-		PP_3581	0.41	-1.6
4,063,167	+		PP_3581	0.44	+0.3