Strain Fitness in Pseudomonas putida KT2440 around PP_3520

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
3,992,739	+		PP_3518	0.77	-0.1
3,992,739	+		PP_3518	0.77	+0.2
3,992,744	+		PP_3518	0.78	+0.4
3,992,887	+		PP_3518	0.87	-0.2
3,992,887	+		PP_3518	0.87	+0.3
3,992,887	+		PP_3518	0.87	-0.4
3,992,887	+		PP_3518	0.87	-0.9
3,992,888	-		PP_3518	0.87	-1.6
3,992,950	-				+1.6
3,993,074	-				+0.3
3,993,107	+				-1.0
3,993,107	+				-0.3
3,993,189	+				+0.8
3,993,190	-				-1.0
3,993,190	-				-0.3
3,993,190	-				-2.3
3,993,190	-				+0.8
3,993,191	+				+0.3
3,993,191	+				-0.2
3,993,225	-				+0.6
3,993,292	+				-0.7
3,993,293	-				+0.6
3,993,308	+				+0.6
3,993,408	-		PP_3519	0.37	+0.7
3,993,605	+				-0.5
3,993,605	+				-0.2
3,993,605	+				+0.5
3,993,612	+				+2.1
3,993,860	+		PP_3520	0.30	+0.8
3,993,861	-		PP_3520	0.30	-0.2
3,993,911	+		PP_3520	0.37	+0.7
3,993,911	+		PP_3520	0.37	-1.0
3,993,912	-		PP_3520	0.37	+0.0
3,993,912	-		PP_3520	0.37	+1.2
3,993,951	-		PP_3520	0.42	+0.2
3,993,957	+		PP_3520	0.43	+0.3
3,993,958	-				+1.8
3,993,958	-		PP_3520	0.43	+0.0
3,993,971	+		PP_3520	0.45	+0.4
3,993,972	-		PP_3520	0.45	-0.3
3,994,004	+		PP_3520	0.50	+0.5
3,994,004	+		PP_3520	0.50	-0.4
3,994,005	-		PP_3520	0.50	+1.2
3,994,013	+		PP_3520	0.51	-0.5
3,994,014	-		PP_3520	0.51	+1.7
3,994,199	-		PP_3520	0.77	+0.9
3,994,199	-		PP_3520	0.77	+0.3
3,994,257	+		PP_3520	0.85	+0.9
3,994,258	-		PP_3520	0.85	-0.4
3,994,262	+		PP_3520	0.85	+1.6
3,994,315	+				-0.6
3,994,315	+				+0.6
3,994,315	+				+0.4
3,994,315	+				+0.2
3,994,315	+				+0.4
3,994,315	+				-0.4
3,994,316	-				-0.2
3,994,316	-				-0.9
3,994,316	-				+0.6
3,994,316	-				-1.4
3,994,319	+				+0.8
3,994,320	-				-1.0
3,994,320	-				-0.2
3,994,550	+		PP_3521	0.21	+0.9
3,994,551	-		PP_3521	0.22	-0.0
3,994,589	+		PP_3521	0.26	-1.5
3,994,589	+		PP_3521	0.26	-0.5
3,994,589	+		PP_3521	0.26	-0.3
3,994,590	-		PP_3521	0.26	-1.3
3,994,590	-		PP_3521	0.26	-2.3
3,994,590	-		PP_3521	0.26	+0.0
3,994,590	-				-0.2
3,994,643	-		PP_3521	0.32	+0.4
3,994,643	-		PP_3521	0.32	-0.4
3,994,643	-		PP_3521	0.32	-1.3
3,994,724	-		PP_3521	0.41	+0.1
3,994,728	+		PP_3521	0.42	-0.1
3,994,728	+		PP_3521	0.42	-0.1
3,994,728	+		PP_3521	0.42	-0.3
3,994,728	+		PP_3521	0.42	+0.4
3,994,728	+		PP_3521	0.42	+0.0
3,994,728	+		PP_3521	0.42	-1.1
3,994,728	+		PP_3521	0.42	-0.4
3,994,729	-		PP_3521	0.42	+0.2
3,994,729	-		PP_3521	0.42	+0.0
3,994,729	-		PP_3521	0.42	+0.1
3,994,730	+		PP_3521	0.42	+0.7
3,994,730	+		PP_3521	0.42	+0.5
3,994,730	+		PP_3521	0.42	-0.3
3,994,730	+		PP_3521	0.42	+1.3
3,994,731	-		PP_3521	0.42	+0.3
3,994,731	-		PP_3521	0.42	+0.6
3,994,731	-		PP_3521	0.42	+0.1
3,994,856	-		PP_3521	0.56	-1.5
3,994,955	+		PP_3521	0.68	-0.2
3,994,980	-		PP_3521	0.71	-0.3
3,995,229	+				+0.3
3,995,230	-				+0.5
3,995,230	-				-2.0
3,995,230	-				+0.2
3,995,266	+				-0.1
3,995,269	-				-1.1
3,995,269	-				+0.9
3,995,279	-				+2.2
3,995,297	+				-0.6
3,995,299	+				-0.2
3,995,299	+				-0.1
3,995,299	+				-0.5
3,995,299	+				+0.7
3,995,300	-				+0.0
3,995,300	-				-0.4
3,995,300	-				+0.8
3,995,300	-				+0.2
3,995,300	-				+0.1
3,995,300	-				+0.6