Strain Fitness in Pseudomonas putida KT2440 around PP_3476

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
3,940,195	+		PP_3473	0.81	-2.6
3,940,195	+		PP_3473	0.81	-0.4
3,940,195	+		PP_3473	0.81	+1.5
3,940,195	+		PP_3473	0.81	-0.3
3,940,196	-		PP_3473	0.81	-0.3
3,940,196	-		PP_3473	0.81	-1.7
3,940,196	-		PP_3473	0.81	-0.3
3,940,274	+				-0.0
3,940,274	+				-0.2
3,940,275	-				-0.3
3,940,275	-				-0.6
3,940,275	-				+1.1
3,940,275	-				+0.7
3,940,275	-				-1.6
3,940,275	-				-0.4
3,940,307	+				-1.4
3,940,390	+		PP_3474	0.30	-3.8
3,940,391	-		PP_3474	0.30	-1.0
3,940,391	-		PP_3474	0.30	+0.7
3,940,479	-		PP_3474	0.52	+0.3
3,940,531	-		PP_3474	0.65	+0.6
3,940,531	-		PP_3474	0.65	-0.5
3,940,531	-		PP_3474	0.65	+0.1
3,940,531	-		PP_3474	0.65	-0.1
3,940,536	+		PP_3474	0.66	+0.7
3,940,758	-		PP_3475	0.17	+0.2
3,940,835	+		PP_3475	0.31	+0.0
3,940,907	+		PP_3475	0.45	+0.6
3,940,954	+		PP_3475	0.54	-0.6
3,940,980	-		PP_3475	0.59	-0.7
3,941,007	-		PP_3475	0.64	+1.4
3,941,007	-		PP_3475	0.64	-0.5
3,941,009	+		PP_3475	0.64	+0.2
3,941,009	+		PP_3475	0.64	-1.0
3,941,009	+		PP_3475	0.64	-0.5
3,941,031	-		PP_3475	0.68	-0.7
3,941,150	+				-0.7
3,941,150	+				-1.4
3,941,150	+				+0.6
3,941,151	-				-0.5
3,941,151	-				-0.4
3,941,154	+				+0.5
3,941,172	+				-0.5
3,941,172	+				+1.1
3,941,172	+				+1.0
3,941,173	-				-0.4
3,941,173	-				+0.6
3,941,322	+		PP_3476	0.39	-0.5
3,941,376	+		PP_3476	0.53	-1.0
3,941,376	+		PP_3476	0.53	-0.7
3,941,376	+		PP_3476	0.53	-0.4
3,941,376	+		PP_3476	0.53	-0.9
3,941,376	+		PP_3476	0.53	-0.5
3,941,377	-		PP_3476	0.53	-0.2
3,941,380	-		PP_3476	0.54	-0.5
3,941,458	-				-0.2
3,941,603	+		PP_3477	0.11	+0.0
3,941,603	+		PP_3477	0.11	-1.0
3,941,733	-		PP_3477	0.38	+0.2
3,941,733	-		PP_3477	0.38	-0.4
3,941,776	+		PP_3477	0.47	-0.1
3,941,811	+		PP_3477	0.54	-0.1
3,941,855	+		PP_3477	0.63	-0.1
3,941,882	+		PP_3477	0.69	-0.3
3,941,883	-		PP_3477	0.69	-0.8
3,941,920	+		PP_3477	0.77	-0.1
3,941,921	-		PP_3477	0.77	-1.2
3,942,104	+				+0.5
3,942,532	-		PP_3478	0.27	-0.3
3,942,553	+		PP_3478	0.28	+0.3
3,942,554	-		PP_3478	0.28	+0.2