Experiment: Isobutyl alcohol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3409 and PP_3410 are separated by 34 nucleotides PP_3410 and PP_3411 are separated by 66 nucleotides PP_3411 and PP_3412 are separated by 221 nucleotides PP_3412 and PP_3413 are separated by 13 nucleotides
PP_3409: PP_3409 - putative Cobalamin biosynthesis protein cobE, at 3,858,743 to 3,859,132
_3409
PP_3410: PP_3410 - Precorrin-4 C(11)-methyltransferase, at 3,859,167 to 3,859,919
_3410
PP_3411: PP_3411 - conserved protein of unknown function, at 3,859,986 to 3,860,228
_3411
PP_3412: PP_3412 - DNA-binding response regulator, LuxR family, at 3,860,450 to 3,861,064
_3412
PP_3413: PP_3413 - Sensor histidine kinase/response regulator, at 3,861,078 to 3,864,359
_3413
Position (kb)
3859
3860
3861 Strain fitness (log2 ratio)
-1
0
1
2 at 3859.098 kb on + strand at 3859.176 kb on + strand at 3859.176 kb on + strand at 3859.177 kb on - strand at 3859.177 kb on - strand at 3859.177 kb on - strand at 3859.423 kb on - strand, within PP_3410 at 3859.835 kb on - strand, within PP_3410 at 3859.853 kb on + strand at 3859.853 kb on + strand at 3859.878 kb on + strand at 3859.878 kb on + strand at 3859.878 kb on + strand at 3859.878 kb on + strand at 3859.879 kb on - strand at 3859.996 kb on + strand at 3860.140 kb on + strand, within PP_3411 at 3860.200 kb on + strand, within PP_3411 at 3860.288 kb on - strand at 3860.303 kb on + strand at 3860.303 kb on + strand at 3860.304 kb on - strand at 3860.304 kb on - strand at 3860.304 kb on - strand at 3860.304 kb on - strand at 3860.304 kb on - strand at 3860.304 kb on - strand at 3860.328 kb on + strand at 3860.328 kb on + strand at 3860.329 kb on - strand at 3860.363 kb on - strand at 3860.399 kb on + strand at 3860.399 kb on + strand at 3860.400 kb on - strand at 3860.434 kb on + strand at 3860.482 kb on + strand at 3860.482 kb on + strand at 3860.483 kb on - strand at 3860.505 kb on + strand at 3860.572 kb on - strand, within PP_3412 at 3860.595 kb on + strand, within PP_3412 at 3860.596 kb on - strand, within PP_3412 at 3860.711 kb on + strand, within PP_3412 at 3860.711 kb on + strand, within PP_3412 at 3860.711 kb on + strand, within PP_3412 at 3860.711 kb on + strand, within PP_3412 at 3860.711 kb on + strand, within PP_3412 at 3860.712 kb on - strand, within PP_3412 at 3860.740 kb on - strand, within PP_3412 at 3860.810 kb on + strand, within PP_3412 at 3860.811 kb on - strand, within PP_3412 at 3860.981 kb on + strand, within PP_3412 at 3861.059 kb on + strand at 3861.060 kb on - strand at 3861.060 kb on - strand at 3861.060 kb on - strand at 3861.203 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Isobutyl alcohol 0.6 vol% remove 3,859,098 + -0.1 3,859,176 + +0.4 3,859,176 + +0.3 3,859,177 - -0.4 3,859,177 - +0.0 3,859,177 - +1.9 3,859,423 - PP_3410 0.34 +0.2 3,859,835 - PP_3410 0.89 -0.2 3,859,853 + -0.1 3,859,853 + +0.9 3,859,878 + +0.7 3,859,878 + +0.0 3,859,878 + -1.7 3,859,878 + -0.3 3,859,879 - +1.2 3,859,996 + -0.8 3,860,140 + PP_3411 0.63 -0.3 3,860,200 + PP_3411 0.88 -1.0 3,860,288 - -0.3 3,860,303 + -0.9 3,860,303 + +0.8 3,860,304 - +1.7 3,860,304 - +1.0 3,860,304 - -0.2 3,860,304 - +1.1 3,860,304 - +1.0 3,860,304 - -0.1 3,860,328 + -0.4 3,860,328 + -0.4 3,860,329 - +0.8 3,860,363 - +0.3 3,860,399 + +0.0 3,860,399 + +0.4 3,860,400 - -0.2 3,860,434 + +0.7 3,860,482 + +0.8 3,860,482 + -0.1 3,860,483 - -0.4 3,860,505 + +0.5 3,860,572 - PP_3412 0.20 +0.4 3,860,595 + PP_3412 0.24 -0.5 3,860,596 - PP_3412 0.24 -0.9 3,860,711 + PP_3412 0.42 +0.5 3,860,711 + PP_3412 0.42 -0.6 3,860,711 + PP_3412 0.42 -0.8 3,860,711 + PP_3412 0.42 +0.6 3,860,711 + PP_3412 0.42 +0.3 3,860,712 - PP_3412 0.43 -1.6 3,860,740 - PP_3412 0.47 -1.2 3,860,810 + PP_3412 0.59 +0.0 3,860,811 - PP_3412 0.59 -0.8 3,860,981 + PP_3412 0.86 +0.7 3,861,059 + +0.1 3,861,060 - +0.8 3,861,060 - -0.4 3,861,060 - -1.1 3,861,203 - +0.1
Or see this region's nucleotide sequence