Strain Fitness in Pseudomonas putida KT2440 around PP_3384

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
3,830,491	-		PP_3383	0.50	-1.0
3,830,597	-		PP_3383	0.56	-0.1
3,830,622	+		PP_3383	0.58	+0.4
3,830,623	-		PP_3383	0.58	-0.8
3,830,623	-		PP_3383	0.58	-1.1
3,830,623	-		PP_3383	0.58	-0.0
3,830,628	+		PP_3383	0.58	-0.6
3,830,628	+		PP_3383	0.58	-0.4
3,830,628	+		PP_3383	0.58	-0.4
3,830,629	-		PP_3383	0.58	-1.9
3,830,629	-		PP_3383	0.58	+0.7
3,830,629	-		PP_3383	0.58	+0.5
3,830,629	-		PP_3383	0.58	+0.2
3,830,629	-		PP_3383	0.58	+0.2
3,830,629	-		PP_3383	0.58	+1.7
3,830,638	-		PP_3383	0.58	+0.7
3,830,698	-		PP_3383	0.62	+0.6
3,830,698	-		PP_3383	0.62	+1.4
3,830,698	-		PP_3383	0.62	-1.2
3,830,698	-		PP_3383	0.62	+1.1
3,830,730	+		PP_3383	0.64	-0.5
3,830,730	+		PP_3383	0.64	-0.2
3,830,731	-		PP_3383	0.64	+0.3
3,830,731	-		PP_3383	0.64	+0.3
3,830,739	+		PP_3383	0.64	+0.1
3,830,740	-		PP_3383	0.64	-0.9
3,830,780	+		PP_3383	0.66	-0.4
3,830,926	-		PP_3383	0.75	-0.5
3,830,926	-		PP_3383	0.75	-0.2
3,830,926	-		PP_3383	0.75	-1.7
3,830,944	-		PP_3383	0.76	+1.4
3,830,965	+		PP_3383	0.77	-1.8
3,831,010	-		PP_3383	0.79	+1.1
3,831,173	+		PP_3383	0.88	+0.2
3,831,174	-		PP_3383	0.88	+0.1
3,831,204	+				-0.0
3,831,204	+				+0.7
3,831,232	-				-0.2
3,831,250	+				+0.3
3,831,250	+				+0.5
3,831,407	+				+0.2
3,831,748	-		PP_3384	0.49	-1.4
3,831,792	+		PP_3384	0.55	-1.2
3,831,793	-		PP_3384	0.55	-1.1
3,831,793	-		PP_3384	0.55	+0.1
3,831,793	-		PP_3384	0.55	-0.3
3,831,793	-		PP_3384	0.55	-0.3
3,832,158	-				-0.2
3,832,223	+				+0.7
3,832,224	-				-1.3
3,832,224	-				+0.8
3,832,272	-				+0.7
3,832,309	+				+0.5
3,832,585	+		PP_3385	0.13	+0.5
3,832,606	+		PP_3385	0.16	+0.3
3,832,607	-		PP_3385	0.16	+0.6
3,832,761	+		PP_3385	0.34	-1.8
3,832,764	+		PP_3385	0.34	+0.5
3,832,765	-		PP_3385	0.34	+0.1
3,832,793	-		PP_3385	0.38	-0.7
3,832,816	+		PP_3385	0.40	-0.5
3,832,817	-		PP_3385	0.40	-0.5
3,833,041	+		PP_3385	0.67	+0.1
3,833,041	+				+0.8
3,833,041	+		PP_3385	0.67	+0.5
3,833,041	+		PP_3385	0.67	-0.5