Strain Fitness in Pseudomonas putida KT2440 around PP_3237

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
3,671,965	+				+0.7
3,671,966	-				-1.4
3,671,966	-				+0.0
3,671,966	-				-0.9
3,672,000	+		PP_3235	0.13	-0.7
3,672,001	-		PP_3235	0.13	+0.4
3,672,010	+		PP_3235	0.15	+1.3
3,672,011	-		PP_3235	0.16	+0.1
3,672,011	-		PP_3235	0.16	+0.5
3,672,038	-		PP_3235	0.22	-0.7
3,672,038	-		PP_3235	0.22	-2.2
3,672,179	+		PP_3235	0.58	+0.6
3,672,180	-		PP_3235	0.59	-1.0
3,672,240	+		PP_3235	0.74	-0.8
3,672,241	-		PP_3235	0.74	+0.3
3,672,256	-		PP_3235	0.78	+0.1
3,672,434	+				-0.3
3,672,506	-				-0.6
3,672,550	+				-1.5
3,672,550	+				+0.7
3,672,551	-				-1.4
3,672,551	-				+0.7
3,672,551	-				+0.5
3,672,623	-		PP_3236	0.33	-0.7
3,672,821	+				+0.6
3,672,948	+				+0.6
3,672,963	-				-1.1
3,673,099	-		PP_3237	0.16	-0.5
3,673,374	-		PP_3237	0.47	-0.6
3,673,374	-		PP_3237	0.47	-2.1
3,673,553	+		PP_3237	0.67	-2.2
3,673,553	+		PP_3237	0.67	+2.3
3,673,554	-		PP_3237	0.67	-0.3
3,673,554	-		PP_3237	0.67	+0.5
3,673,571	+				-1.6
3,673,571	+		PP_3237	0.69	-0.9
3,673,792	+				-0.7
3,673,792	+				-1.5
3,673,811	+				-0.3
3,673,811	+				-3.0
3,673,811	+				+0.1
3,673,828	+				-0.6
3,673,841	+				-0.3
3,673,842	-				-1.4
3,673,842	-				+0.2
3,673,842	-				-1.0
3,673,924	-				-0.6
3,674,042	-		PP_3238	0.10	+1.2
3,674,185	+		PP_3238	0.35	+0.1
3,674,199	+				-0.9
3,674,218	+		PP_3238	0.41	+1.1
3,674,218	+		PP_3238	0.41	-0.1
3,674,218	+		PP_3238	0.41	-0.6
3,674,297	+		PP_3238	0.55	-0.5
3,674,297	+		PP_3238	0.55	+0.3
3,674,330	-				-1.9
3,674,351	-		PP_3238	0.64	+0.7
3,674,437	-		PP_3238	0.79	+1.3
3,674,456	+		PP_3238	0.83	+0.7
3,674,569	+				-0.2
3,674,576	+				-0.1
3,674,623	+				-0.8
3,674,623	+				+0.3
3,674,623	+				-0.6