Experiment: Isobutyl alcohol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3235 and PP_3236 are separated by 198 nucleotides PP_3236 and PP_3237 are separated by 160 nucleotides PP_3237 and PP_3238 are separated by 139 nucleotides PP_3238 and PP_3239 are separated by 231 nucleotides
PP_3235: PP_3235 - conserved protein of unknown function, at 3,671,950 to 3,672,342
_3235
PP_3236: PP_3236 - putative Lipoprotein OprI, at 3,672,541 to 3,672,792
_3236
PP_3237: PP_3237 - Universal stress protein family, at 3,672,953 to 3,673,843
_3237
PP_3238: PP_3238 - putative Transcriptional regulator PyrR, at 3,673,983 to 3,674,555
_3238
PP_3239: PP_3239 - putative cointegrate resolution protein T Tn4652, at 3,674,787 to 3,675,773
_3239
Position (kb)
3672
3673
3674 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3671.965 kb on + strand at 3671.966 kb on - strand at 3671.966 kb on - strand at 3671.966 kb on - strand at 3672.000 kb on + strand, within PP_3235 at 3672.001 kb on - strand, within PP_3235 at 3672.010 kb on + strand, within PP_3235 at 3672.011 kb on - strand, within PP_3235 at 3672.011 kb on - strand, within PP_3235 at 3672.038 kb on - strand, within PP_3235 at 3672.038 kb on - strand, within PP_3235 at 3672.179 kb on + strand, within PP_3235 at 3672.180 kb on - strand, within PP_3235 at 3672.240 kb on + strand, within PP_3235 at 3672.241 kb on - strand, within PP_3235 at 3672.256 kb on - strand, within PP_3235 at 3672.434 kb on + strand at 3672.506 kb on - strand at 3672.550 kb on + strand at 3672.550 kb on + strand at 3672.551 kb on - strand at 3672.551 kb on - strand at 3672.551 kb on - strand at 3672.623 kb on - strand, within PP_3236 at 3672.821 kb on + strand at 3672.948 kb on + strand at 3672.963 kb on - strand at 3673.099 kb on - strand, within PP_3237 at 3673.374 kb on - strand, within PP_3237 at 3673.374 kb on - strand, within PP_3237 at 3673.553 kb on + strand, within PP_3237 at 3673.553 kb on + strand, within PP_3237 at 3673.554 kb on - strand, within PP_3237 at 3673.554 kb on - strand, within PP_3237 at 3673.571 kb on + strand at 3673.571 kb on + strand, within PP_3237 at 3673.792 kb on + strand at 3673.792 kb on + strand at 3673.811 kb on + strand at 3673.811 kb on + strand at 3673.811 kb on + strand at 3673.828 kb on + strand at 3673.841 kb on + strand at 3673.842 kb on - strand at 3673.842 kb on - strand at 3673.842 kb on - strand at 3673.924 kb on - strand at 3674.042 kb on - strand, within PP_3238 at 3674.185 kb on + strand, within PP_3238 at 3674.199 kb on + strand at 3674.218 kb on + strand, within PP_3238 at 3674.218 kb on + strand, within PP_3238 at 3674.218 kb on + strand, within PP_3238 at 3674.297 kb on + strand, within PP_3238 at 3674.297 kb on + strand, within PP_3238 at 3674.330 kb on - strand at 3674.351 kb on - strand, within PP_3238 at 3674.437 kb on - strand, within PP_3238 at 3674.456 kb on + strand, within PP_3238 at 3674.569 kb on + strand at 3674.576 kb on + strand at 3674.623 kb on + strand at 3674.623 kb on + strand at 3674.623 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Isobutyl alcohol 0.6 vol% remove 3,671,965 + +0.7 3,671,966 - -1.4 3,671,966 - +0.0 3,671,966 - -0.9 3,672,000 + PP_3235 0.13 -0.7 3,672,001 - PP_3235 0.13 +0.4 3,672,010 + PP_3235 0.15 +1.3 3,672,011 - PP_3235 0.16 +0.1 3,672,011 - PP_3235 0.16 +0.5 3,672,038 - PP_3235 0.22 -0.7 3,672,038 - PP_3235 0.22 -2.2 3,672,179 + PP_3235 0.58 +0.6 3,672,180 - PP_3235 0.59 -1.0 3,672,240 + PP_3235 0.74 -0.8 3,672,241 - PP_3235 0.74 +0.3 3,672,256 - PP_3235 0.78 +0.1 3,672,434 + -0.3 3,672,506 - -0.6 3,672,550 + -1.5 3,672,550 + +0.7 3,672,551 - -1.4 3,672,551 - +0.7 3,672,551 - +0.5 3,672,623 - PP_3236 0.33 -0.7 3,672,821 + +0.6 3,672,948 + +0.6 3,672,963 - -1.1 3,673,099 - PP_3237 0.16 -0.5 3,673,374 - PP_3237 0.47 -0.6 3,673,374 - PP_3237 0.47 -2.1 3,673,553 + PP_3237 0.67 -2.2 3,673,553 + PP_3237 0.67 +2.3 3,673,554 - PP_3237 0.67 -0.3 3,673,554 - PP_3237 0.67 +0.5 3,673,571 + -1.6 3,673,571 + PP_3237 0.69 -0.9 3,673,792 + -0.7 3,673,792 + -1.5 3,673,811 + -0.3 3,673,811 + -3.0 3,673,811 + +0.1 3,673,828 + -0.6 3,673,841 + -0.3 3,673,842 - -1.4 3,673,842 - +0.2 3,673,842 - -1.0 3,673,924 - -0.6 3,674,042 - PP_3238 0.10 +1.2 3,674,185 + PP_3238 0.35 +0.1 3,674,199 + -0.9 3,674,218 + PP_3238 0.41 +1.1 3,674,218 + PP_3238 0.41 -0.1 3,674,218 + PP_3238 0.41 -0.6 3,674,297 + PP_3238 0.55 -0.5 3,674,297 + PP_3238 0.55 +0.3 3,674,330 - -1.9 3,674,351 - PP_3238 0.64 +0.7 3,674,437 - PP_3238 0.79 +1.3 3,674,456 + PP_3238 0.83 +0.7 3,674,569 + -0.2 3,674,576 + -0.1 3,674,623 + -0.8 3,674,623 + +0.3 3,674,623 + -0.6
Or see this region's nucleotide sequence