Experiment: Isobutyl alcohol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3001 and PP_3002 overlap by 4 nucleotides PP_3002 and PP_3003 are separated by 4 nucleotides PP_3003 and PP_3004 are separated by 241 nucleotides PP_3004 and PP_3005 are separated by 52 nucleotides
PP_3001: PP_3001 - CAIB/BAIF family protein, at 3,396,291 to 3,397,523
_3001
PP_3002: PP_3002 - shikimate dehydrogenase-related enzyme, at 3,397,520 to 3,398,338
_3002
PP_3003: PP_3003 - 3-dehydroquinate dehydratase 3, type II, at 3,398,343 to 3,398,780
_3003
PP_3004: PP_3004 - conserved protein of unknown function, at 3,399,022 to 3,399,279
_3004
PP_3005: PP_3005 - conserved protein of unknown function, at 3,399,332 to 3,400,033
_3005
Position (kb)
3397
3398
3399 Strain fitness (log2 ratio)
-2
-1
0
1 at 3396.586 kb on - strand, within PP_3001 at 3396.657 kb on + strand, within PP_3001 at 3396.658 kb on - strand, within PP_3001 at 3396.788 kb on + strand, within PP_3001 at 3396.807 kb on + strand at 3396.808 kb on - strand, within PP_3001 at 3396.808 kb on - strand, within PP_3001 at 3396.808 kb on - strand, within PP_3001 at 3396.808 kb on - strand, within PP_3001 at 3396.897 kb on + strand, within PP_3001 at 3396.898 kb on - strand, within PP_3001 at 3396.924 kb on + strand, within PP_3001 at 3396.939 kb on + strand, within PP_3001 at 3396.940 kb on - strand, within PP_3001 at 3396.940 kb on - strand, within PP_3001 at 3396.940 kb on - strand, within PP_3001 at 3397.006 kb on - strand, within PP_3001 at 3397.389 kb on - strand, within PP_3001 at 3397.405 kb on + strand at 3397.502 kb on + strand at 3397.502 kb on + strand at 3397.619 kb on + strand, within PP_3002 at 3397.662 kb on + strand, within PP_3002 at 3397.663 kb on - strand, within PP_3002 at 3398.153 kb on + strand, within PP_3002 at 3398.336 kb on + strand at 3398.356 kb on + strand at 3398.356 kb on + strand at 3398.356 kb on + strand at 3398.356 kb on + strand at 3398.356 kb on + strand at 3398.357 kb on - strand at 3398.357 kb on - strand at 3398.357 kb on - strand at 3398.413 kb on - strand, within PP_3003 at 3398.589 kb on + strand, within PP_3003 at 3398.589 kb on + strand, within PP_3003 at 3398.590 kb on - strand, within PP_3003 at 3398.595 kb on + strand, within PP_3003 at 3398.693 kb on - strand, within PP_3003 at 3398.743 kb on - strand at 3398.867 kb on + strand at 3398.867 kb on + strand at 3398.868 kb on - strand at 3398.868 kb on - strand at 3398.868 kb on - strand at 3398.868 kb on - strand at 3398.921 kb on - strand at 3398.940 kb on + strand at 3398.940 kb on + strand at 3398.940 kb on + strand at 3398.940 kb on + strand at 3398.941 kb on - strand at 3398.941 kb on - strand at 3398.941 kb on - strand at 3398.941 kb on - strand at 3398.941 kb on - strand at 3398.941 kb on - strand at 3398.943 kb on + strand at 3398.944 kb on - strand at 3398.944 kb on - strand at 3398.944 kb on - strand at 3399.034 kb on - strand at 3399.034 kb on - strand at 3399.205 kb on + strand, within PP_3004 at 3399.283 kb on + strand at 3399.283 kb on + strand at 3399.283 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Isobutyl alcohol 0.6 vol% remove 3,396,586 - PP_3001 0.24 +0.1 3,396,657 + PP_3001 0.30 +0.6 3,396,658 - PP_3001 0.30 +0.1 3,396,788 + PP_3001 0.40 +0.6 3,396,807 + -0.4 3,396,808 - PP_3001 0.42 -0.8 3,396,808 - PP_3001 0.42 +1.2 3,396,808 - PP_3001 0.42 +0.3 3,396,808 - PP_3001 0.42 +0.2 3,396,897 + PP_3001 0.49 -0.4 3,396,898 - PP_3001 0.49 -0.5 3,396,924 + PP_3001 0.51 -0.6 3,396,939 + PP_3001 0.53 -0.4 3,396,940 - PP_3001 0.53 -0.7 3,396,940 - PP_3001 0.53 +0.5 3,396,940 - PP_3001 0.53 -0.1 3,397,006 - PP_3001 0.58 -0.4 3,397,389 - PP_3001 0.89 -0.9 3,397,405 + -0.0 3,397,502 + -0.2 3,397,502 + +0.4 3,397,619 + PP_3002 0.12 -0.6 3,397,662 + PP_3002 0.17 -0.7 3,397,663 - PP_3002 0.17 -0.2 3,398,153 + PP_3002 0.77 -0.5 3,398,336 + +0.2 3,398,356 + -0.1 3,398,356 + -1.7 3,398,356 + +0.1 3,398,356 + -0.9 3,398,356 + +0.8 3,398,357 - -1.9 3,398,357 - +0.6 3,398,357 - -1.3 3,398,413 - PP_3003 0.16 +0.1 3,398,589 + PP_3003 0.56 +0.1 3,398,589 + PP_3003 0.56 -0.1 3,398,590 - PP_3003 0.56 -0.6 3,398,595 + PP_3003 0.58 +1.2 3,398,693 - PP_3003 0.80 -0.3 3,398,743 - -0.4 3,398,867 + +0.2 3,398,867 + +0.9 3,398,868 - +0.6 3,398,868 - +0.2 3,398,868 - +0.1 3,398,868 - +0.4 3,398,921 - -0.3 3,398,940 + -1.1 3,398,940 + +0.5 3,398,940 + +0.7 3,398,940 + +0.1 3,398,941 - +0.6 3,398,941 - +0.3 3,398,941 - -0.6 3,398,941 - +0.6 3,398,941 - -0.3 3,398,941 - -0.5 3,398,943 + -0.1 3,398,944 - +0.8 3,398,944 - -1.2 3,398,944 - -0.6 3,399,034 - -0.8 3,399,034 - -1.3 3,399,205 + PP_3004 0.71 +0.2 3,399,283 + +0.3 3,399,283 + +1.5 3,399,283 + +0.4
Or see this region's nucleotide sequence