Strain Fitness in Pseudomonas putida KT2440 around PP_3002

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
3,396,586	-		PP_3001	0.24	+0.1
3,396,657	+		PP_3001	0.30	+0.6
3,396,658	-		PP_3001	0.30	+0.1
3,396,788	+		PP_3001	0.40	+0.6
3,396,807	+				-0.4
3,396,808	-		PP_3001	0.42	-0.8
3,396,808	-		PP_3001	0.42	+1.2
3,396,808	-		PP_3001	0.42	+0.3
3,396,808	-		PP_3001	0.42	+0.2
3,396,897	+		PP_3001	0.49	-0.4
3,396,898	-		PP_3001	0.49	-0.5
3,396,924	+		PP_3001	0.51	-0.6
3,396,939	+		PP_3001	0.53	-0.4
3,396,940	-		PP_3001	0.53	-0.7
3,396,940	-		PP_3001	0.53	+0.5
3,396,940	-		PP_3001	0.53	-0.1
3,397,006	-		PP_3001	0.58	-0.4
3,397,389	-		PP_3001	0.89	-0.9
3,397,405	+				-0.0
3,397,502	+				-0.2
3,397,502	+				+0.4
3,397,619	+		PP_3002	0.12	-0.6
3,397,662	+		PP_3002	0.17	-0.7
3,397,663	-		PP_3002	0.17	-0.2
3,398,153	+		PP_3002	0.77	-0.5
3,398,336	+				+0.2
3,398,356	+				-0.1
3,398,356	+				-1.7
3,398,356	+				+0.1
3,398,356	+				-0.9
3,398,356	+				+0.8
3,398,357	-				-1.9
3,398,357	-				+0.6
3,398,357	-				-1.3
3,398,413	-		PP_3003	0.16	+0.1
3,398,589	+		PP_3003	0.56	+0.1
3,398,589	+		PP_3003	0.56	-0.1
3,398,590	-		PP_3003	0.56	-0.6
3,398,595	+		PP_3003	0.58	+1.2
3,398,693	-		PP_3003	0.80	-0.3
3,398,743	-				-0.4
3,398,867	+				+0.2
3,398,867	+				+0.9
3,398,868	-				+0.6
3,398,868	-				+0.2
3,398,868	-				+0.1
3,398,868	-				+0.4
3,398,921	-				-0.3
3,398,940	+				-1.1
3,398,940	+				+0.5
3,398,940	+				+0.7
3,398,940	+				+0.1
3,398,941	-				+0.6
3,398,941	-				+0.3
3,398,941	-				-0.6
3,398,941	-				+0.6
3,398,941	-				-0.3
3,398,941	-				-0.5
3,398,943	+				-0.1
3,398,944	-				+0.8
3,398,944	-				-1.2
3,398,944	-				-0.6
3,399,034	-				-0.8
3,399,034	-				-1.3
3,399,205	+		PP_3004	0.71	+0.2
3,399,283	+				+0.3
3,399,283	+				+1.5
3,399,283	+				+0.4