Strain Fitness in Pseudomonas putida KT2440 around PP_2762

Experiment: Isobutyl alcohol 0.6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2761 and PP_2762 are separated by 65 nucleotidesPP_2762 and PP_2764 are separated by 194 nucleotidesPP_2764 and PP_2765 are separated by 26 nucleotides PP_2761: PP_2761 - putative Ribose ABC transporter, permease protein, at 3,145,578 to 3,146,564 _2761 PP_2762: PP_2762 - acyl-CoA dehydrogenase/oxidase family protein, at 3,146,630 to 3,147,868 _2762 PP_2764: PP_2764 - FMN reductase (NADPH), at 3,148,063 to 3,148,767 _2764 PP_2765: PP_2765 - putative Sulfonate monooxygenase MsuD, at 3,148,794 to 3,149,885 _2765 Position (kb) 3146 3147 3148Strain fitness (log2 ratio) -2 -1 0 1at 3145.679 kb on - strand, within PP_2761at 3145.738 kb on + strand, within PP_2761at 3145.785 kb on + strand, within PP_2761at 3145.884 kb on + strand, within PP_2761at 3145.885 kb on - strand, within PP_2761at 3145.885 kb on - strand, within PP_2761at 3145.961 kb on + strand, within PP_2761at 3145.961 kb on + strand, within PP_2761at 3145.962 kb on - strand, within PP_2761at 3146.047 kb on - strand, within PP_2761at 3146.047 kb on - strand, within PP_2761at 3146.149 kb on + strand, within PP_2761at 3146.431 kb on + strand, within PP_2761at 3146.432 kb on - strand, within PP_2761at 3146.432 kb on - strand, within PP_2761at 3146.611 kb on + strandat 3146.663 kb on + strandat 3146.663 kb on + strandat 3146.663 kb on + strandat 3146.663 kb on + strandat 3146.664 kb on - strandat 3146.664 kb on - strandat 3146.667 kb on + strandat 3146.668 kb on - strandat 3146.718 kb on + strandat 3146.834 kb on + strand, within PP_2762at 3146.835 kb on - strand, within PP_2762at 3146.835 kb on - strand, within PP_2762at 3146.835 kb on - strand, within PP_2762at 3146.937 kb on + strand, within PP_2762at 3146.988 kb on + strand, within PP_2762at 3146.989 kb on - strand, within PP_2762at 3147.157 kb on - strand, within PP_2762at 3147.157 kb on - strand, within PP_2762at 3147.393 kb on + strand, within PP_2762at 3147.396 kb on + strand, within PP_2762at 3147.822 kb on + strandat 3147.836 kb on - strandat 3148.221 kb on + strand, within PP_2764at 3148.222 kb on - strand, within PP_2764at 3148.474 kb on + strand, within PP_2764at 3148.636 kb on + strand, within PP_2764at 3148.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Isobutyl alcohol 0.6 vol%
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3,145,679 - PP_2761 0.10 +1.0
3,145,738 + PP_2761 0.16 +0.1
3,145,785 + PP_2761 0.21 +0.6
3,145,884 + PP_2761 0.31 -0.9
3,145,885 - PP_2761 0.31 +0.4
3,145,885 - PP_2761 0.31 +0.3
3,145,961 + PP_2761 0.39 +1.7
3,145,961 + PP_2761 0.39 +0.1
3,145,962 - PP_2761 0.39 -0.7
3,146,047 - PP_2761 0.48 -0.9
3,146,047 - PP_2761 0.48 -0.5
3,146,149 + PP_2761 0.58 +1.0
3,146,431 + PP_2761 0.86 +0.4
3,146,432 - PP_2761 0.87 +0.0
3,146,432 - PP_2761 0.87 -0.9
3,146,611 + -2.0
3,146,663 + +0.3
3,146,663 + -0.7
3,146,663 + +1.1
3,146,663 + -0.6
3,146,664 - +0.8
3,146,664 - -0.0
3,146,667 + -0.1
3,146,668 - -1.6
3,146,718 + +0.3
3,146,834 + PP_2762 0.16 -0.8
3,146,835 - PP_2762 0.17 -1.0
3,146,835 - PP_2762 0.17 -0.1
3,146,835 - PP_2762 0.17 -0.6
3,146,937 + PP_2762 0.25 +0.3
3,146,988 + PP_2762 0.29 -1.1
3,146,989 - PP_2762 0.29 -1.0
3,147,157 - PP_2762 0.43 -0.9
3,147,157 - PP_2762 0.43 -0.3
3,147,393 + PP_2762 0.62 -0.5
3,147,396 + PP_2762 0.62 +0.2
3,147,822 + -0.6
3,147,836 - +0.0
3,148,221 + PP_2764 0.22 -0.1
3,148,222 - PP_2764 0.23 -1.4
3,148,474 + PP_2764 0.58 +0.2
3,148,636 + PP_2764 0.81 -1.1
3,148,830 - +0.5

Or see this region's nucleotide sequence