Strain Fitness in Pseudomonas putida KT2440 around PP_2396

Experiment: Isobutyl alcohol 0.6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2395 and PP_2396 are separated by 198 nucleotidesPP_2396 and PP_2397 are separated by 9 nucleotidesPP_2397 and PP_2398 are separated by 74 nucleotides PP_2395: PP_2395 - Leucine-rich repeat domain protein, at 2,737,622 to 2,742,115 _2395 PP_2396: PP_2396 - conserved exported protein of unknown function, at 2,742,314 to 2,742,895 _2396 PP_2397: PP_2397 - EF hand domain protein, at 2,742,905 to 2,743,561 _2397 PP_2398: PP_2398 - conserved protein of unknown function, UPF0276 family, at 2,743,636 to 2,744,469 _2398 Position (kb) 2742 2743Strain fitness (log2 ratio) -2 -1 0 1 2at 2741.537 kb on - strand, within PP_2395at 2741.537 kb on - strand, within PP_2395at 2741.607 kb on + strand, within PP_2395at 2741.607 kb on + strand, within PP_2395at 2741.607 kb on + strand, within PP_2395at 2741.643 kb on + strand, within PP_2395at 2741.643 kb on + strand, within PP_2395at 2741.643 kb on + strand, within PP_2395at 2741.644 kb on - strand, within PP_2395at 2741.644 kb on - strand, within PP_2395at 2741.670 kb on + strandat 2741.671 kb on - strandat 2742.059 kb on - strandat 2742.059 kb on - strandat 2742.108 kb on + strandat 2742.108 kb on + strandat 2742.108 kb on + strandat 2742.109 kb on - strandat 2742.109 kb on - strandat 2742.109 kb on - strandat 2742.109 kb on - strandat 2742.109 kb on - strandat 2742.130 kb on - strandat 2742.166 kb on + strandat 2742.166 kb on + strandat 2742.167 kb on - strandat 2742.167 kb on - strandat 2742.205 kb on + strandat 2742.206 kb on - strandat 2742.240 kb on + strandat 2742.246 kb on + strandat 2742.339 kb on + strandat 2742.339 kb on + strandat 2742.339 kb on + strandat 2742.339 kb on + strandat 2742.339 kb on + strandat 2742.340 kb on - strandat 2742.340 kb on - strandat 2742.340 kb on - strandat 2742.340 kb on - strandat 2742.340 kb on - strandat 2742.424 kb on - strand, within PP_2396at 2742.560 kb on + strand, within PP_2396at 2742.661 kb on + strand, within PP_2396at 2742.662 kb on - strand, within PP_2396at 2742.662 kb on - strand, within PP_2396at 2742.808 kb on - strand, within PP_2396at 2742.946 kb on + strandat 2742.947 kb on - strandat 2742.947 kb on - strandat 2742.957 kb on - strandat 2742.957 kb on - strandat 2742.977 kb on + strand, within PP_2397at 2742.977 kb on + strand, within PP_2397at 2742.977 kb on + strand, within PP_2397at 2742.978 kb on - strand, within PP_2397at 2743.008 kb on - strand, within PP_2397at 2743.008 kb on - strand, within PP_2397at 2743.033 kb on + strand, within PP_2397at 2743.034 kb on - strand, within PP_2397at 2743.276 kb on + strand, within PP_2397at 2743.567 kb on + strandat 2743.567 kb on + strandat 2743.568 kb on - strandat 2743.664 kb on + strandat 2743.665 kb on - strandat 2743.769 kb on - strand, within PP_2398

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Per-strain Table

Position Strand Gene LocusTag Fraction Isobutyl alcohol 0.6 vol%
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2,741,537 - PP_2395 0.87 -0.7
2,741,537 - PP_2395 0.87 -1.0
2,741,607 + PP_2395 0.89 -1.4
2,741,607 + PP_2395 0.89 +0.3
2,741,607 + PP_2395 0.89 -1.7
2,741,643 + PP_2395 0.89 +1.1
2,741,643 + PP_2395 0.89 -0.4
2,741,643 + PP_2395 0.89 -2.4
2,741,644 - PP_2395 0.89 +0.4
2,741,644 - PP_2395 0.89 +0.6
2,741,670 + -0.5
2,741,671 - +1.1
2,742,059 - +0.5
2,742,059 - +0.6
2,742,108 + +1.6
2,742,108 + -0.4
2,742,108 + +0.5
2,742,109 - -1.7
2,742,109 - +0.1
2,742,109 - +0.6
2,742,109 - -0.0
2,742,109 - +0.1
2,742,130 - -0.5
2,742,166 + +0.6
2,742,166 + -0.3
2,742,167 - +0.2
2,742,167 - -1.7
2,742,205 + -0.5
2,742,206 - +1.4
2,742,240 + -0.9
2,742,246 + +0.8
2,742,339 + -0.1
2,742,339 + -0.2
2,742,339 + +0.2
2,742,339 + +0.6
2,742,339 + +0.2
2,742,340 - +1.9
2,742,340 - +0.2
2,742,340 - -0.2
2,742,340 - -0.1
2,742,340 - -1.4
2,742,424 - PP_2396 0.19 -0.5
2,742,560 + PP_2396 0.42 -0.9
2,742,661 + PP_2396 0.60 -1.3
2,742,662 - PP_2396 0.60 -0.0
2,742,662 - PP_2396 0.60 -0.7
2,742,808 - PP_2396 0.85 +0.0
2,742,946 + -1.2
2,742,947 - +0.1
2,742,947 - +0.6
2,742,957 - +0.6
2,742,957 - +0.1
2,742,977 + PP_2397 0.11 +1.3
2,742,977 + PP_2397 0.11 +0.3
2,742,977 + PP_2397 0.11 -1.5
2,742,978 - PP_2397 0.11 -0.7
2,743,008 - PP_2397 0.16 +0.7
2,743,008 - PP_2397 0.16 +1.4
2,743,033 + PP_2397 0.19 +0.1
2,743,034 - PP_2397 0.20 -0.2
2,743,276 + PP_2397 0.56 -1.5
2,743,567 + +0.4
2,743,567 + -0.1
2,743,568 - -0.9
2,743,664 + +0.1
2,743,665 - +0.6
2,743,769 - PP_2398 0.16 -0.8

Or see this region's nucleotide sequence