Strain Fitness in Pseudomonas putida KT2440 around PP_2396

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
2,741,537	-		PP_2395	0.87	-0.7
2,741,537	-		PP_2395	0.87	-1.0
2,741,607	+		PP_2395	0.89	-1.4
2,741,607	+		PP_2395	0.89	+0.3
2,741,607	+		PP_2395	0.89	-1.7
2,741,643	+		PP_2395	0.89	+1.1
2,741,643	+		PP_2395	0.89	-0.4
2,741,643	+		PP_2395	0.89	-2.4
2,741,644	-		PP_2395	0.89	+0.4
2,741,644	-		PP_2395	0.89	+0.6
2,741,670	+				-0.5
2,741,671	-				+1.1
2,742,059	-				+0.5
2,742,059	-				+0.6
2,742,108	+				+1.6
2,742,108	+				-0.4
2,742,108	+				+0.5
2,742,109	-				-1.7
2,742,109	-				+0.1
2,742,109	-				+0.6
2,742,109	-				-0.0
2,742,109	-				+0.1
2,742,130	-				-0.5
2,742,166	+				+0.6
2,742,166	+				-0.3
2,742,167	-				+0.2
2,742,167	-				-1.7
2,742,205	+				-0.5
2,742,206	-				+1.4
2,742,240	+				-0.9
2,742,246	+				+0.8
2,742,339	+				-0.1
2,742,339	+				-0.2
2,742,339	+				+0.2
2,742,339	+				+0.6
2,742,339	+				+0.2
2,742,340	-				+1.9
2,742,340	-				+0.2
2,742,340	-				-0.2
2,742,340	-				-0.1
2,742,340	-				-1.4
2,742,424	-		PP_2396	0.19	-0.5
2,742,560	+		PP_2396	0.42	-0.9
2,742,661	+		PP_2396	0.60	-1.3
2,742,662	-		PP_2396	0.60	-0.0
2,742,662	-		PP_2396	0.60	-0.7
2,742,808	-		PP_2396	0.85	+0.0
2,742,946	+				-1.2
2,742,947	-				+0.1
2,742,947	-				+0.6
2,742,957	-				+0.6
2,742,957	-				+0.1
2,742,977	+		PP_2397	0.11	+1.3
2,742,977	+		PP_2397	0.11	+0.3
2,742,977	+		PP_2397	0.11	-1.5
2,742,978	-		PP_2397	0.11	-0.7
2,743,008	-		PP_2397	0.16	+0.7
2,743,008	-		PP_2397	0.16	+1.4
2,743,033	+		PP_2397	0.19	+0.1
2,743,034	-		PP_2397	0.20	-0.2
2,743,276	+		PP_2397	0.56	-1.5
2,743,567	+				+0.4
2,743,567	+				-0.1
2,743,568	-				-0.9
2,743,664	+				+0.1
2,743,665	-				+0.6
2,743,769	-		PP_2398	0.16	-0.8