Strain Fitness in Pseudomonas putida KT2440 around PP_2207

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
2,512,374	+		PP_2206	0.44	+0.4
2,512,375	-		PP_2206	0.44	+0.7
2,512,375	-		PP_2206	0.44	-0.6
2,512,375	-		PP_2206	0.44	+1.8
2,512,375	-		PP_2206	0.44	+0.1
2,512,375	-		PP_2206	0.44	-1.2
2,512,534	-				+0.3
2,512,590	+		PP_2206	0.61	-1.6
2,512,617	+		PP_2206	0.63	+0.0
2,512,617	+		PP_2206	0.63	-0.1
2,512,947	+				+2.3
2,512,947	+		PP_2206	0.89	+0.4
2,512,948	-		PP_2206	0.89	+0.1
2,513,053	-				-1.2
2,513,174	-				-0.1
2,513,245	+				+0.8
2,513,246	-				+0.7
2,513,246	-				-0.5
2,513,255	+				-0.9
2,513,256	-				-0.2
2,513,293	-				-0.5
2,513,361	-				-0.8
2,513,361	-				-0.4
2,513,550	-		PP_2207	0.26	-0.7
2,513,712	+		PP_2207	0.41	-2.1
2,513,783	+		PP_2207	0.48	+0.5
2,513,783	+		PP_2207	0.48	-0.5
2,513,784	-		PP_2207	0.48	-1.6
2,514,197	+		PP_2207	0.86	+0.1
2,514,197	+		PP_2207	0.86	-0.7
2,514,198	-		PP_2207	0.87	-0.5
2,514,198	-		PP_2207	0.87	-0.2
2,514,338	+				-2.0
2,514,338	+				-0.6
2,514,338	+				-0.6
2,514,339	-				+0.9
2,514,339	-				+0.4
2,514,513	+				-0.3
2,514,513	+				-0.3
2,514,540	+				+0.0
2,514,540	+				-0.4
2,514,540	+				+0.3
2,514,540	+				+0.3
2,514,540	+				-0.9
2,514,541	-				-0.5
2,514,541	-				+0.4
2,514,541	-				+1.0
2,514,648	-		PP_2208	0.11	-1.1
2,514,844	+				+1.3
2,514,845	-		PP_2208	0.35	-0.8
2,514,928	+		PP_2208	0.45	+0.2
2,514,929	-		PP_2208	0.45	+0.5
2,514,929	-		PP_2208	0.45	-0.6
2,514,929	-		PP_2208	0.45	+0.2
2,514,944	+		PP_2208	0.46	-0.6
2,514,944	+		PP_2208	0.46	+0.4
2,514,945	-		PP_2208	0.47	+0.5
2,515,118	+		PP_2208	0.68	-1.0
2,515,119	-		PP_2208	0.68	-0.1
2,515,119	-		PP_2208	0.68	-1.0
2,515,209	+		PP_2208	0.79	-0.3
2,515,210	-		PP_2208	0.79	-0.7