Strain Fitness in Pseudomonas putida KT2440 around PP_1976

Experiment: Isobutyl alcohol 0.6 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Isobutyl alcohol 0.6 vol%
2,237,664	+		PP_1975	0.41	-0.2
2,237,665	-		PP_1975	0.41	+0.0
2,237,672	+		PP_1975	0.41	+0.7
2,237,700	+		PP_1975	0.43	+0.1
2,237,701	-		PP_1975	0.43	-0.6
2,237,777	-		PP_1975	0.48	+1.5
2,237,959	-		PP_1975	0.60	+0.5
2,238,009	+		PP_1975	0.63	+0.8
2,238,010	-		PP_1975	0.63	+0.5
2,238,011	+				+0.8
2,238,011	+		PP_1975	0.63	+0.2
2,238,012	-		PP_1975	0.63	-2.1
2,238,029	+		PP_1975	0.64	-0.4
2,238,029	+		PP_1975	0.64	-0.1
2,238,029	-		PP_1975	0.64	+0.2
2,238,030	-		PP_1975	0.64	-0.4
2,238,030	-		PP_1975	0.64	-0.0
2,238,046	+		PP_1975	0.65	-0.4
2,238,047	-		PP_1975	0.65	+0.5
2,238,054	+		PP_1975	0.66	+0.3
2,238,054	+		PP_1975	0.66	+1.6
2,238,054	+		PP_1975	0.66	-1.5
2,238,054	+		PP_1975	0.66	-0.6
2,238,063	+		PP_1975	0.66	-2.4
2,238,064	-		PP_1975	0.66	+0.4
2,238,064	-		PP_1975	0.66	+0.2
2,238,500	-				-0.7
2,238,684	+				-1.3
2,238,808	+		PP_1976	0.20	-0.3
2,238,919	+		PP_1976	0.30	-0.3
2,238,920	-		PP_1976	0.30	-0.0
2,239,460	+		PP_1976	0.76	-2.1
2,239,461	-		PP_1976	0.76	-0.6
2,239,507	+		PP_1976	0.80	-1.2
2,239,508	-		PP_1976	0.80	-0.6
2,239,508	-		PP_1976	0.80	-1.5
2,239,508	-		PP_1976	0.80	-0.0
2,239,528	+		PP_1976	0.82	+0.0
2,239,547	-		PP_1976	0.84	-1.2
2,239,635	+				+0.6