Strain Fitness in Pseudomonas putida KT2440 around PP_1788
Experiment: Isobutyl alcohol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Isobutyl alcohol 0.6 vol% |
---|---|---|---|---|---|
remove | |||||
2,003,672 | - | PP_1787 | 0.17 | +0.2 | |
2,003,770 | + | PP_1787 | 0.27 | -0.7 | |
2,003,892 | + | PP_1787 | 0.39 | -0.4 | |
2,004,070 | - | PP_1787 | 0.56 | +1.0 | |
2,004,113 | - | PP_1787 | 0.61 | +0.6 | |
2,004,139 | + | PP_1787 | 0.63 | -1.1 | |
2,004,255 | - | PP_1787 | 0.75 | +0.3 | |
2,004,335 | + | PP_1787 | 0.83 | +1.8 | |
2,004,527 | + | +1.0 | |||
2,004,822 | + | PP_1788 | 0.15 | -0.6 | |
2,004,860 | - | PP_1788 | 0.19 | -1.0 | |
2,005,183 | - | PP_1788 | 0.48 | -0.9 | |
2,005,420 | - | PP_1788 | 0.70 | -0.1 | |
2,005,515 | - | PP_1788 | 0.79 | -0.2 | |
2,005,742 | + | +0.1 | |||
2,005,924 | - | -0.4 | |||
2,006,355 | + | PP_1789 | 0.54 | +1.0 | |
2,006,368 | - | PP_1789 | 0.56 | +0.2 | |
2,006,368 | - | PP_1789 | 0.56 | +0.5 | |
2,006,369 | + | PP_1789 | 0.56 | +0.4 | |
2,006,369 | + | PP_1789 | 0.56 | +1.0 | |
2,006,407 | + | PP_1789 | 0.62 | -0.2 | |
2,006,427 | + | PP_1789 | 0.64 | -0.0 | |
2,006,457 | + | PP_1789 | 0.69 | -0.1 | |
2,006,569 | + | PP_1789 | 0.85 | +0.3 | |
2,006,591 | + | PP_1789 | 0.88 | +0.5 |
Or see this region's nucleotide sequence