Strain Fitness in Pseudomonas putida KT2440 around PP_1678
Experiment: Isobutyl alcohol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Isobutyl alcohol 0.6 vol% |
---|---|---|---|---|---|
remove | |||||
1,872,388 | + | PP_1677 | 0.46 | +1.7 | |
1,872,462 | - | PP_1677 | 0.51 | +0.6 | |
1,872,462 | - | PP_1677 | 0.51 | -0.9 | |
1,872,696 | + | PP_1677 | 0.67 | +1.1 | |
1,872,793 | + | PP_1677 | 0.74 | +0.7 | |
1,872,794 | - | PP_1677 | 0.74 | +1.6 | |
1,872,875 | - | PP_1677 | 0.80 | -0.3 | |
1,872,988 | + | PP_1677 | 0.87 | +0.3 | |
1,872,988 | + | PP_1677 | 0.87 | -1.1 | |
1,872,988 | + | PP_1677 | 0.87 | +1.3 | |
1,872,989 | - | PP_1677 | 0.87 | +0.1 | |
1,873,073 | - | -0.1 | |||
1,873,073 | - | +1.1 | |||
1,873,178 | - | -0.5 | |||
1,873,259 | + | PP_1678 | 0.17 | -1.3 | |
1,873,259 | + | PP_1678 | 0.17 | +0.1 | |
1,873,586 | + | PP_1678 | 0.79 | -1.2 | |
1,873,586 | + | PP_1678 | 0.79 | -0.8 | |
1,873,586 | + | PP_1678 | 0.79 | -1.6 | |
1,873,587 | - | PP_1678 | 0.80 | -0.1 | |
1,873,668 | + | -1.4 | |||
1,873,668 | + | +0.6 | |||
1,873,669 | - | -0.7 | |||
1,873,669 | - | +0.9 | |||
1,873,689 | + | -0.3 | |||
1,873,689 | + | -1.2 | |||
1,873,689 | + | +0.4 | |||
1,873,689 | + | -2.7 | |||
1,873,689 | + | +1.1 | |||
1,873,689 | + | -0.1 | |||
1,873,690 | - | +0.7 | |||
1,873,690 | - | -0.3 | |||
1,874,437 | + | PP_1679 | 0.71 | -0.4 | |
1,874,484 | + | PP_1679 | 0.75 | +1.3 | |
1,874,485 | - | PP_1679 | 0.75 | +0.7 | |
1,874,485 | - | PP_1679 | 0.75 | -1.2 |
Or see this region's nucleotide sequence