Strain Fitness in Pseudomonas putida KT2440 around PP_1092

Experiment: Isobutyl alcohol 0.6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1090 and PP_1091 are separated by 70 nucleotidesPP_1091 and PP_1092 are separated by 104 nucleotidesPP_1092 and PP_1093 are separated by 4 nucleotidesPP_1093 and PP_1094 overlap by 32 nucleotides PP_1090: PP_1090 - putative Virulence factors positive transcription regulator BvgA, at 1,249,104 to 1,249,727 _1090 PP_1091: PP_1091 - conserved protein of unknown function, at 1,249,798 to 1,249,974 _1091 PP_1092: PP_1092 - DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites, at 1,250,079 to 1,250,717 _1092 PP_1093: PP_1093 - putative electron transport complex protein, at 1,250,722 to 1,251,270 _1093 PP_1094: PP_1094 - putative electron transport complex protein, at 1,251,239 to 1,251,841 _1094 Position (kb) 1250 1251Strain fitness (log2 ratio) -2 -1 0 1at 1249.092 kb on + strandat 1249.092 kb on + strandat 1249.110 kb on - strandat 1249.142 kb on - strandat 1249.179 kb on + strand, within PP_1090at 1249.179 kb on + strand, within PP_1090at 1249.211 kb on - strand, within PP_1090at 1249.326 kb on - strand, within PP_1090at 1249.333 kb on + strand, within PP_1090at 1249.402 kb on - strand, within PP_1090at 1249.442 kb on + strand, within PP_1090at 1249.470 kb on + strand, within PP_1090at 1249.471 kb on - strand, within PP_1090at 1249.617 kb on + strand, within PP_1090at 1249.617 kb on + strand, within PP_1090at 1249.617 kb on + strand, within PP_1090at 1249.618 kb on - strand, within PP_1090at 1249.618 kb on - strand, within PP_1090at 1249.618 kb on - strand, within PP_1090at 1249.618 kb on - strand, within PP_1090at 1249.625 kb on + strand, within PP_1090at 1249.640 kb on + strand, within PP_1090at 1249.641 kb on - strand, within PP_1090at 1249.641 kb on - strand, within PP_1090at 1249.644 kb on + strand, within PP_1090at 1249.644 kb on + strand, within PP_1090at 1249.644 kb on + strand, within PP_1090at 1249.645 kb on - strand, within PP_1090at 1249.645 kb on - strand, within PP_1090at 1249.645 kb on - strand, within PP_1090at 1249.785 kb on + strandat 1249.799 kb on + strandat 1249.963 kb on - strandat 1249.963 kb on - strandat 1249.963 kb on - strandat 1250.010 kb on + strandat 1250.010 kb on + strandat 1250.010 kb on + strandat 1250.011 kb on - strandat 1250.011 kb on - strandat 1250.013 kb on - strandat 1250.104 kb on + strandat 1250.104 kb on + strandat 1250.104 kb on + strandat 1250.165 kb on - strand, within PP_1092at 1250.207 kb on - strand, within PP_1092at 1250.217 kb on + strand, within PP_1092at 1250.282 kb on + strand, within PP_1092at 1250.297 kb on + strand, within PP_1092at 1250.297 kb on + strand, within PP_1092at 1250.298 kb on - strand, within PP_1092at 1250.407 kb on - strand, within PP_1092at 1250.448 kb on + strand, within PP_1092at 1250.448 kb on + strand, within PP_1092at 1250.448 kb on + strand, within PP_1092at 1250.448 kb on + strand, within PP_1092at 1250.449 kb on - strand, within PP_1092at 1250.449 kb on - strand, within PP_1092at 1250.449 kb on - strand, within PP_1092at 1250.449 kb on - strand, within PP_1092at 1250.474 kb on - strand, within PP_1092at 1250.474 kb on - strand, within PP_1092at 1250.494 kb on + strand, within PP_1092at 1250.494 kb on + strand, within PP_1092at 1250.495 kb on - strand, within PP_1092at 1250.495 kb on - strand, within PP_1092at 1250.524 kb on + strand, within PP_1092at 1250.524 kb on + strand, within PP_1092at 1250.524 kb on + strand, within PP_1092at 1250.524 kb on + strand, within PP_1092at 1250.525 kb on - strand, within PP_1092at 1250.525 kb on - strand, within PP_1092at 1250.525 kb on - strand, within PP_1092at 1250.525 kb on - strand, within PP_1092at 1250.525 kb on - strand, within PP_1092at 1250.641 kb on + strand, within PP_1092at 1250.642 kb on - strand, within PP_1092at 1250.774 kb on + strandat 1250.774 kb on + strandat 1250.775 kb on - strandat 1250.775 kb on - strandat 1250.775 kb on - strandat 1250.775 kb on - strandat 1250.775 kb on - strandat 1250.941 kb on + strand, within PP_1093at 1250.942 kb on - strand, within PP_1093at 1250.988 kb on - strand, within PP_1093at 1251.082 kb on + strand, within PP_1093at 1251.083 kb on - strand, within PP_1093at 1251.083 kb on - strand, within PP_1093at 1251.083 kb on - strand, within PP_1093at 1251.086 kb on + strand, within PP_1093at 1251.086 kb on + strand, within PP_1093at 1251.086 kb on + strand, within PP_1093at 1251.087 kb on - strand, within PP_1093at 1251.087 kb on - strand, within PP_1093at 1251.087 kb on - strand, within PP_1093at 1251.087 kb on - strand, within PP_1093at 1251.087 kb on - strand, within PP_1093at 1251.109 kb on - strand, within PP_1093at 1251.109 kb on - strand, within PP_1093at 1251.151 kb on + strand, within PP_1093at 1251.240 kb on + strandat 1251.241 kb on - strandat 1251.241 kb on - strandat 1251.241 kb on - strandat 1251.241 kb on - strandat 1251.266 kb on + strandat 1251.266 kb on + strandat 1251.266 kb on + strandat 1251.267 kb on - strandat 1251.267 kb on - strandat 1251.267 kb on - strandat 1251.267 kb on - strandat 1251.271 kb on + strandat 1251.272 kb on - strandat 1251.272 kb on - strandat 1251.272 kb on - strandat 1251.272 kb on - strandat 1251.288 kb on + strandat 1251.288 kb on + strandat 1251.586 kb on + strand, within PP_1094at 1251.586 kb on + strand, within PP_1094at 1251.586 kb on + strand, within PP_1094at 1251.587 kb on - strand, within PP_1094at 1251.595 kb on + strand, within PP_1094at 1251.595 kb on + strand, within PP_1094at 1251.626 kb on - strand, within PP_1094at 1251.626 kb on - strand, within PP_1094at 1251.681 kb on + strand, within PP_1094at 1251.681 kb on + strand, within PP_1094at 1251.681 kb on + strand, within PP_1094at 1251.681 kb on + strand, within PP_1094at 1251.682 kb on - strand, within PP_1094at 1251.682 kb on - strand, within PP_1094at 1251.682 kb on - strand, within PP_1094at 1251.682 kb on - strand, within PP_1094at 1251.685 kb on + strand, within PP_1094at 1251.685 kb on + strand, within PP_1094at 1251.686 kb on - strand, within PP_1094at 1251.686 kb on - strand, within PP_1094

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Per-strain Table

Position Strand Gene LocusTag Fraction Isobutyl alcohol 0.6 vol%
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1,249,092 + +0.1
1,249,092 + -0.3
1,249,110 - -0.7
1,249,142 - +1.7
1,249,179 + PP_1090 0.12 +0.0
1,249,179 + PP_1090 0.12 -0.8
1,249,211 - PP_1090 0.17 +0.2
1,249,326 - PP_1090 0.36 -0.3
1,249,333 + PP_1090 0.37 -0.0
1,249,402 - PP_1090 0.48 -2.6
1,249,442 + PP_1090 0.54 -0.2
1,249,470 + PP_1090 0.59 -1.7
1,249,471 - PP_1090 0.59 -0.3
1,249,617 + PP_1090 0.82 +0.7
1,249,617 + PP_1090 0.82 -0.9
1,249,617 + PP_1090 0.82 -0.9
1,249,618 - PP_1090 0.82 -0.3
1,249,618 - PP_1090 0.82 +0.3
1,249,618 - PP_1090 0.82 +0.1
1,249,618 - PP_1090 0.82 -0.6
1,249,625 + PP_1090 0.83 -0.5
1,249,640 + PP_1090 0.86 +0.5
1,249,641 - PP_1090 0.86 +1.3
1,249,641 - PP_1090 0.86 -1.9
1,249,644 + PP_1090 0.87 +0.2
1,249,644 + PP_1090 0.87 -0.1
1,249,644 + PP_1090 0.87 +1.1
1,249,645 - PP_1090 0.87 -0.3
1,249,645 - PP_1090 0.87 +0.7
1,249,645 - PP_1090 0.87 -0.5
1,249,785 + -1.0
1,249,799 + +0.6
1,249,963 - +0.7
1,249,963 - +0.6
1,249,963 - -0.9
1,250,010 + -0.5
1,250,010 + -0.8
1,250,010 + -1.0
1,250,011 - +1.0
1,250,011 - +0.6
1,250,013 - -0.4
1,250,104 + -0.2
1,250,104 + +1.1
1,250,104 + -1.2
1,250,165 - PP_1092 0.13 -0.2
1,250,207 - PP_1092 0.20 -0.5
1,250,217 + PP_1092 0.22 -1.0
1,250,282 + PP_1092 0.32 -0.7
1,250,297 + PP_1092 0.34 +0.8
1,250,297 + PP_1092 0.34 +1.1
1,250,298 - PP_1092 0.34 +1.1
1,250,407 - PP_1092 0.51 -0.0
1,250,448 + PP_1092 0.58 +0.0
1,250,448 + PP_1092 0.58 +0.3
1,250,448 + PP_1092 0.58 -0.3
1,250,448 + PP_1092 0.58 +0.3
1,250,449 - PP_1092 0.58 -0.1
1,250,449 - PP_1092 0.58 +0.6
1,250,449 - PP_1092 0.58 +0.7
1,250,449 - PP_1092 0.58 -1.1
1,250,474 - PP_1092 0.62 +0.7
1,250,474 - PP_1092 0.62 -0.2
1,250,494 + PP_1092 0.65 -0.4
1,250,494 + PP_1092 0.65 +0.1
1,250,495 - PP_1092 0.65 -0.1
1,250,495 - PP_1092 0.65 -0.4
1,250,524 + PP_1092 0.70 +0.3
1,250,524 + PP_1092 0.70 +1.1
1,250,524 + PP_1092 0.70 +0.3
1,250,524 + PP_1092 0.70 -0.3
1,250,525 - PP_1092 0.70 +0.3
1,250,525 - PP_1092 0.70 +1.1
1,250,525 - PP_1092 0.70 +0.6
1,250,525 - PP_1092 0.70 +0.9
1,250,525 - PP_1092 0.70 +0.2
1,250,641 + PP_1092 0.88 -0.3
1,250,642 - PP_1092 0.88 -1.5
1,250,774 + +1.2
1,250,774 + -0.3
1,250,775 - +0.0
1,250,775 - -2.5
1,250,775 - +0.2
1,250,775 - -0.0
1,250,775 - +0.9
1,250,941 + PP_1093 0.40 +0.6
1,250,942 - PP_1093 0.40 -0.6
1,250,988 - PP_1093 0.48 +0.6
1,251,082 + PP_1093 0.66 -1.0
1,251,083 - PP_1093 0.66 +0.2
1,251,083 - PP_1093 0.66 -0.4
1,251,083 - PP_1093 0.66 -0.1
1,251,086 + PP_1093 0.66 +0.6
1,251,086 + PP_1093 0.66 +0.2
1,251,086 + PP_1093 0.66 -0.3
1,251,087 - PP_1093 0.66 -0.6
1,251,087 - PP_1093 0.66 -0.8
1,251,087 - PP_1093 0.66 -1.2
1,251,087 - PP_1093 0.66 +0.2
1,251,087 - PP_1093 0.66 +0.3
1,251,109 - PP_1093 0.70 -0.6
1,251,109 - PP_1093 0.70 +0.1
1,251,151 + PP_1093 0.78 -0.2
1,251,240 + -0.2
1,251,241 - -0.1
1,251,241 - +0.6
1,251,241 - +0.5
1,251,241 - -1.5
1,251,266 + +0.6
1,251,266 + +1.6
1,251,266 + +0.1
1,251,267 - +0.0
1,251,267 - -0.2
1,251,267 - +1.0
1,251,267 - +0.8
1,251,271 + +1.4
1,251,272 - +1.3
1,251,272 - +0.7
1,251,272 - -1.3
1,251,272 - +1.3
1,251,288 + +1.0
1,251,288 + +1.4
1,251,586 + PP_1094 0.58 -0.2
1,251,586 + PP_1094 0.58 -0.0
1,251,586 + PP_1094 0.58 -0.0
1,251,587 - PP_1094 0.58 -0.2
1,251,595 + PP_1094 0.59 -0.6
1,251,595 + PP_1094 0.59 -0.9
1,251,626 - PP_1094 0.64 +0.5
1,251,626 - PP_1094 0.64 -0.8
1,251,681 + PP_1094 0.73 -0.2
1,251,681 + PP_1094 0.73 -0.8
1,251,681 + PP_1094 0.73 -0.2
1,251,681 + PP_1094 0.73 -0.4
1,251,682 - PP_1094 0.73 +1.1
1,251,682 - PP_1094 0.73 -0.7
1,251,682 - PP_1094 0.73 +0.3
1,251,682 - PP_1094 0.73 +0.4
1,251,685 + PP_1094 0.74 +1.6
1,251,685 + PP_1094 0.74 +0.4
1,251,686 - PP_1094 0.74 -0.5
1,251,686 - PP_1094 0.74 +0.4

Or see this region's nucleotide sequence