Strain Fitness in Pseudomonas putida KT2440 around PP_0236
Experiment: Isobutyl alcohol 0.6 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Isobutyl alcohol 0.6 vol% |
---|---|---|---|---|---|
remove | |||||
289,974 | - | -0.4 | |||
290,048 | + | +1.5 | |||
290,048 | + | +0.1 | |||
290,049 | - | -0.0 | |||
290,049 | - | +0.9 | |||
290,348 | + | PP_0235 | 0.42 | +0.3 | |
290,349 | - | PP_0235 | 0.42 | +0.4 | |
290,404 | - | PP_0235 | 0.50 | +0.1 | |
290,404 | - | PP_0235 | 0.50 | +0.4 | |
290,471 | + | PP_0235 | 0.61 | -1.4 | |
290,472 | - | PP_0235 | 0.61 | -1.0 | |
290,493 | - | PP_0235 | 0.64 | +0.8 | |
290,493 | - | PP_0235 | 0.64 | +1.4 | |
290,688 | + | +0.2 | |||
290,689 | - | -0.1 | |||
290,745 | - | -0.2 | |||
290,903 | + | -0.2 | |||
290,904 | - | -0.6 | |||
291,294 | + | PP_0236 | 0.60 | -0.2 | |
291,406 | + | PP_0236 | 0.78 | -0.5 | |
291,407 | - | PP_0236 | 0.79 | -0.3 | |
291,407 | - | PP_0236 | 0.79 | -1.4 | |
291,558 | + | -0.8 | |||
291,794 | + | PP_0237 | 0.18 | -0.2 | |
291,795 | - | PP_0237 | 0.18 | +0.3 | |
291,795 | - | PP_0237 | 0.18 | +0.2 | |
291,925 | + | PP_0237 | 0.32 | -0.5 | |
291,925 | + | PP_0237 | 0.32 | -1.1 | |
291,926 | - | PP_0237 | 0.32 | -0.6 | |
291,926 | - | PP_0237 | 0.32 | -0.1 | |
291,926 | - | PP_0237 | 0.32 | +0.3 | |
291,926 | - | PP_0237 | 0.32 | +0.4 | |
291,926 | - | PP_0237 | 0.32 | -0.1 | |
291,963 | + | PP_0237 | 0.36 | -0.6 | |
291,963 | + | PP_0237 | 0.36 | +0.0 | |
292,051 | + | PP_0237 | 0.45 | -1.6 | |
292,051 | + | PP_0237 | 0.45 | -0.3 | |
292,051 | + | PP_0237 | 0.45 | +0.5 | |
292,052 | - | PP_0237 | 0.45 | +0.2 | |
292,052 | - | PP_0237 | 0.45 | +0.2 | |
292,090 | + | PP_0237 | 0.49 | -0.2 | |
292,111 | + | PP_0237 | 0.51 | +1.6 | |
292,112 | - | PP_0237 | 0.51 | +0.2 | |
292,112 | - | PP_0237 | 0.51 | +0.9 | |
292,261 | + | PP_0237 | 0.66 | -1.3 | |
292,279 | + | PP_0237 | 0.68 | +0.2 | |
292,280 | - | PP_0237 | 0.68 | +2.3 | |
292,280 | - | PP_0237 | 0.68 | -1.4 | |
292,280 | - | PP_0237 | 0.68 | -0.5 | |
292,439 | - | PP_0237 | 0.85 | +1.8 | |
292,518 | - | -0.1 |
Or see this region's nucleotide sequence