Strain Fitness in Pseudomonas sp. RS175 around PFR28_03236

Experiment: caffeic (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic (C) 2.5 mM
3,742,078	+		PFR28_03234	0.67	-0.8
3,742,078	+		PFR28_03234	0.67	-1.4
3,742,079	-		PFR28_03234	0.67	+0.7
3,742,079	-		PFR28_03234	0.67	+0.1
3,742,153	+		PFR28_03234	0.85	+0.4
3,742,153	+		PFR28_03234	0.85	+0.1
3,742,153	+		PFR28_03234	0.85	+0.1
3,742,153	+		PFR28_03234	0.85	+1.3
3,742,153	+		PFR28_03234	0.85	-0.4
3,742,153	+		PFR28_03234	0.85	+2.4
3,742,154	-		PFR28_03234	0.85	-1.3
3,742,154	-		PFR28_03234	0.85	+0.2
3,742,154	-		PFR28_03234	0.85	+0.4
3,742,154	-		PFR28_03234	0.85	+1.1
3,742,154	-		PFR28_03234	0.85	-0.9
3,742,154	-		PFR28_03234	0.85	+0.4
3,742,154	-		PFR28_03234	0.85	+0.2
3,742,154	-		PFR28_03234	0.85	+0.1
3,742,154	-		PFR28_03234	0.85	-0.2
3,742,154	-		PFR28_03234	0.85	-2.3
3,742,154	-		PFR28_03234	0.85	+0.5
3,742,154	-		PFR28_03234	0.85	-1.4
3,742,154	-		PFR28_03234	0.85	-0.7
3,742,154	-		PFR28_03234	0.85	-0.5
3,742,203	+				-0.3
3,742,204	-				+0.4
3,742,204	-				+0.5
3,742,204	-				-0.8
3,742,323	-				-0.4
3,742,324	+				-1.0
3,742,324	+				-1.1
3,742,324	+				+0.3
3,742,325	-				+1.1
3,742,325	-				-1.4
3,742,474	+		PFR28_03235	0.25	+0.5
3,742,474	+		PFR28_03235	0.25	+0.8
3,742,561	+		PFR28_03235	0.37	-1.1
3,742,561	+		PFR28_03235	0.37	-0.1
3,742,562	-		PFR28_03235	0.38	+0.3
3,742,562	-		PFR28_03235	0.38	-0.0
3,742,562	-		PFR28_03235	0.38	+0.5
3,742,562	-		PFR28_03235	0.38	+0.3
3,742,562	-		PFR28_03235	0.38	+0.3
3,742,859	-		PFR28_03235	0.82	-0.3
3,742,859	-		PFR28_03235	0.82	+0.1
3,742,954	+				+0.2
3,742,954	+				+0.1
3,742,955	-				-1.1
3,742,955	-				-0.0
3,742,955	-				-0.2
3,742,955	-				-0.6
3,743,029	-				-0.7
3,743,048	-				-0.3
3,743,341	+		PFR28_03236	0.34	+0.2
3,743,341	+		PFR28_03236	0.34	-0.9
3,743,341	+		PFR28_03236	0.34	-0.4
3,743,419	+		PFR28_03236	0.43	-0.0
3,743,419	+		PFR28_03236	0.43	+0.6
3,743,419	+		PFR28_03236	0.43	+1.4
3,743,419	+		PFR28_03236	0.43	-0.3
3,743,419	+		PFR28_03236	0.43	+0.0
3,743,420	-		PFR28_03236	0.43	+1.1
3,743,509	+		PFR28_03236	0.54	-0.6
3,743,509	+		PFR28_03236	0.54	-1.2
3,743,509	+		PFR28_03236	0.54	-0.8
3,743,509	+		PFR28_03236	0.54	-0.8
3,743,510	-		PFR28_03236	0.54	+0.0
3,743,510	-		PFR28_03236	0.54	+0.8
3,743,510	-		PFR28_03236	0.54	-0.4
3,743,510	-		PFR28_03236	0.54	-1.4
3,743,587	+		PFR28_03236	0.63	+0.7
3,743,587	+		PFR28_03236	0.63	+1.3
3,743,588	-		PFR28_03236	0.64	-0.5
3,743,588	-		PFR28_03236	0.64	+0.3
3,743,588	-		PFR28_03236	0.64	+0.2
3,743,588	-		PFR28_03236	0.64	-1.4
3,743,588	-		PFR28_03236	0.64	+0.9
3,743,611	+		PFR28_03236	0.66	-0.8
3,743,611	+		PFR28_03236	0.66	+0.6
3,743,611	+		PFR28_03236	0.66	+0.9
3,743,611	+		PFR28_03236	0.66	+0.9
3,743,611	+		PFR28_03236	0.66	-0.0
3,743,612	-		PFR28_03236	0.66	-2.2
3,743,612	-		PFR28_03236	0.66	+0.2
3,743,612	-		PFR28_03236	0.66	-0.8
3,743,635	+		PFR28_03236	0.69	+0.7
3,743,635	+		PFR28_03236	0.69	-0.2
3,743,636	-		PFR28_03236	0.69	+0.1
3,743,636	-		PFR28_03236	0.69	-1.3
3,743,636	-		PFR28_03236	0.69	-0.3
3,743,752	+		PFR28_03236	0.83	+0.5
3,743,752	+		PFR28_03236	0.83	-0.5
3,743,752	+		PFR28_03236	0.83	+0.3
3,743,752	+		PFR28_03236	0.83	-1.2
3,743,752	+		PFR28_03236	0.83	-2.4
3,743,752	+		PFR28_03236	0.83	+2.5
3,743,753	-		PFR28_03236	0.84	+1.5
3,743,753	-		PFR28_03236	0.84	+1.9
3,743,753	-		PFR28_03236	0.84	-0.2
3,743,753	-		PFR28_03236	0.84	+0.3
3,743,753	-		PFR28_03236	0.84	-0.7
3,743,753	-		PFR28_03236	0.84	+0.6
3,743,753	-		PFR28_03236	0.84	+0.3
3,743,753	-		PFR28_03236	0.84	-0.8
3,743,876	+				-0.4
3,743,877	-				+0.7
3,743,877	-				-0.3
3,743,877	-				+0.4
3,743,877	-				-0.0
3,744,137	+				+0.6
3,744,140	+				-0.3
3,744,141	-				+0.2
3,744,175	+				+0.6
3,744,185	-				-0.3
3,744,190	+				-0.9
3,744,191	-				+0.8
3,744,201	+				+0.2
3,744,201	+				+0.4
3,744,202	-				+0.6
3,744,203	+				+0.0
3,744,213	+				-0.2
3,744,213	+				-1.7
3,744,227	+				+2.1
3,744,227	+				-0.5
3,744,227	+				-0.7
3,744,239	+				-1.8
3,744,239	+				-0.5
3,744,239	+				-0.5
3,744,239	+				-0.5
3,744,239	+				-1.6
3,744,239	+				-1.4
3,744,240	-				-4.0
3,744,240	-				-2.8
3,744,240	-				-3.8
3,744,240	-				-4.3
3,744,243	+				-0.1
3,744,243	+				-0.5
3,744,243	+				-1.0
3,744,243	+				-1.1
3,744,243	+				-1.0
3,744,243	+				-1.4
3,744,243	+				-0.1
3,744,243	+				-1.8
3,744,244	-				-3.0
3,744,244	-				-2.8
3,744,244	-				-4.0
3,744,244	-				-3.9
3,744,244	-				-3.4
3,744,244	-				-3.4
3,744,244	-				-2.9
3,744,309	+				-1.9
3,744,309	+				-0.4
3,744,310	-				-2.7
3,744,310	-				-2.2
3,744,310	-				-3.8
3,744,310	-				-2.9
3,744,400	+		PFR28_03237	0.15	+0.6
3,744,400	+		PFR28_03237	0.15	-1.2
3,744,400	+		PFR28_03237	0.15	+0.3
3,744,400	+		PFR28_03237	0.15	-2.1
3,744,400	+		PFR28_03237	0.15	-1.3
3,744,400	+		PFR28_03237	0.15	-0.0
3,744,400	+		PFR28_03237	0.15	-0.8
3,744,400	+		PFR28_03237	0.15	-0.2
3,744,400	+		PFR28_03237	0.15	-1.7
3,744,400	+		PFR28_03237	0.15	-1.4
3,744,400	+		PFR28_03237	0.15	-1.4
3,744,400	+		PFR28_03237	0.15	-1.8
3,744,400	+		PFR28_03237	0.15	-1.5
3,744,401	-		PFR28_03237	0.15	-4.0
3,744,401	-		PFR28_03237	0.15	-2.9
3,744,401	-		PFR28_03237	0.15	-3.6
3,744,401	-		PFR28_03237	0.15	-3.1
3,744,401	-		PFR28_03237	0.15	-3.8
3,744,401	-		PFR28_03237	0.15	-3.0
3,744,401	-		PFR28_03237	0.15	-2.9
3,744,401	-		PFR28_03237	0.15	-3.4
3,744,401	-		PFR28_03237	0.15	-2.7
3,744,411	+		PFR28_03237	0.17	-1.5
3,744,504	+		PFR28_03237	0.32	-1.8
3,744,504	+		PFR28_03237	0.32	-0.4
3,744,522	-		PFR28_03237	0.35	+0.7
3,744,541	+		PFR28_03237	0.38	-1.9
3,744,541	+		PFR28_03237	0.38	-2.8
3,744,542	-		PFR28_03237	0.38	-3.2
3,744,542	-		PFR28_03237	0.38	-3.5
3,744,600	+		PFR28_03237	0.48	-0.6
3,744,604	+		PFR28_03237	0.49	+0.7
3,744,604	+		PFR28_03237	0.49	-1.0
3,744,604	+		PFR28_03237	0.49	-0.8
3,744,604	+		PFR28_03237	0.49	+0.7
3,744,604	+		PFR28_03237	0.49	-0.9
3,744,604	+		PFR28_03237	0.49	-1.2
3,744,604	+		PFR28_03237	0.49	-1.4
3,744,604	+		PFR28_03237	0.49	-2.3
3,744,605	-		PFR28_03237	0.49	-3.9
3,744,605	-		PFR28_03237	0.49	-3.1
3,744,605	-		PFR28_03237	0.49	-3.2
3,744,605	-		PFR28_03237	0.49	-4.4
3,744,605	-		PFR28_03237	0.49	-4.4
3,744,605	-		PFR28_03237	0.49	-3.4
3,744,649	+		PFR28_03237	0.56	-0.6
3,744,649	+		PFR28_03237	0.56	-0.7
3,744,649	+		PFR28_03237	0.56	-0.3
3,744,649	+		PFR28_03237	0.56	-2.2
3,744,649	+		PFR28_03237	0.56	-0.4
3,744,649	+		PFR28_03237	0.56	-2.3
3,744,649	+		PFR28_03237	0.56	-1.5
3,744,649	+		PFR28_03237	0.56	-0.4
3,744,649	+		PFR28_03237	0.56	-0.9
3,744,650	-		PFR28_03237	0.56	-4.3
3,744,650	-		PFR28_03237	0.56	-2.5
3,744,650	-		PFR28_03237	0.56	-3.1
3,744,650	-		PFR28_03237	0.56	-3.2
3,744,650	-		PFR28_03237	0.56	-3.9
3,744,650	-		PFR28_03237	0.56	-1.7
3,744,650	-		PFR28_03237	0.56	-2.4
3,744,650	-		PFR28_03237	0.56	-3.2
3,744,650	-		PFR28_03237	0.56	-2.1
3,744,650	-		PFR28_03237	0.56	-2.5
3,744,650	-		PFR28_03237	0.56	-2.3
3,744,650	-		PFR28_03237	0.56	-2.8
3,744,650	-		PFR28_03237	0.56	-2.7
3,744,650	-		PFR28_03237	0.56	-3.4
3,744,691	+		PFR28_03237	0.63	-1.1
3,744,739	+		PFR28_03237	0.71	-0.1
3,744,740	-		PFR28_03237	0.71	-3.0
3,744,748	+		PFR28_03237	0.73	+0.3
3,744,749	-		PFR28_03237	0.73	-2.9
3,744,749	-		PFR28_03237	0.73	-2.7
3,744,749	-		PFR28_03237	0.73	-2.7
3,744,757	+		PFR28_03237	0.74	-2.5
3,744,757	+		PFR28_03237	0.74	-0.2
3,744,757	+		PFR28_03237	0.74	-2.7
3,744,757	+		PFR28_03237	0.74	-1.8
3,744,758	-		PFR28_03237	0.74	-2.8
3,744,758	-		PFR28_03237	0.74	-3.0
3,744,758	-		PFR28_03237	0.74	-3.6
3,744,758	-		PFR28_03237	0.74	-2.5
3,744,758	-		PFR28_03237	0.74	-2.3
3,744,758	-		PFR28_03237	0.74	-3.5
3,744,758	-		PFR28_03237	0.74	-3.1
3,744,758	-		PFR28_03237	0.74	-1.8