Strain Fitness in Pseudomonas sp. RS175 around PFR28_03091

Experiment: caffeic (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic (C) 2.5 mM
3,591,487	-				+0.8
3,591,609	+		PFR28_03090	0.23	-1.1
3,591,609	+		PFR28_03090	0.23	-1.7
3,591,609	+		PFR28_03090	0.23	-1.2
3,591,610	-		PFR28_03090	0.23	+0.9
3,591,610	-		PFR28_03090	0.23	+0.1
3,591,612	+		PFR28_03090	0.24	+0.7
3,591,612	+		PFR28_03090	0.24	-0.4
3,591,612	+		PFR28_03090	0.24	+0.3
3,591,612	+		PFR28_03090	0.24	+0.0
3,591,613	-		PFR28_03090	0.24	+0.1
3,591,613	-		PFR28_03090	0.24	+0.7
3,591,613	-		PFR28_03090	0.24	-0.5
3,591,756	+		PFR28_03090	0.43	+0.2
3,591,756	+		PFR28_03090	0.43	+0.0
3,591,792	+		PFR28_03090	0.48	-0.6
3,591,793	-		PFR28_03090	0.48	-0.4
3,591,928	+		PFR28_03090	0.67	+0.2
3,592,041	+		PFR28_03090	0.82	+0.1
3,592,041	+		PFR28_03090	0.82	+0.7
3,592,042	-		PFR28_03090	0.82	-0.2
3,592,095	+		PFR28_03090	0.89	-1.4
3,592,102	+				-0.7
3,592,104	+				-0.4
3,592,104	+				+0.9
3,592,186	+				+0.3
3,592,186	+				+1.7
3,592,186	+				+0.4
3,592,186	+				-0.7
3,592,187	-				+0.7
3,592,187	-				-1.8
3,592,187	-				-0.7
3,592,187	-				-0.5
3,592,187	-				+1.1
3,592,187	-				-0.2
3,592,187	-				-0.2
3,592,187	-				+0.2
3,592,187	-				-0.3
3,592,187	-				-0.2
3,592,187	-				+0.3
3,592,188	+				-0.2
3,592,189	-				+0.1
3,592,189	-				+0.2
3,592,193	-				+1.4
3,592,193	-				+1.0
3,592,207	+				+1.3
3,592,207	+				+0.4
3,592,208	-				-0.9
3,592,268	+				+0.7
3,592,268	+				-2.4
3,592,333	+				+0.2
3,592,333	+				+1.1
3,592,333	+				+0.4
3,592,333	+				-2.6
3,592,333	+				+0.6
3,592,334	-				-0.7
3,592,334	-				+0.7
3,592,412	+				-0.9
3,592,413	-				+0.7
3,592,457	+				+1.4
3,592,458	-				+0.4
3,592,458	-				-0.6
3,592,730	+		PFR28_03091	0.21	-0.6
3,592,730	+		PFR28_03091	0.21	-0.6
3,592,730	+		PFR28_03091	0.21	-0.4
3,592,730	+		PFR28_03091	0.21	-0.5
3,592,730	+		PFR28_03091	0.21	-1.7
3,592,731	-		PFR28_03091	0.21	-0.1
3,592,731	-		PFR28_03091	0.21	-3.0
3,592,731	-		PFR28_03091	0.21	+0.3
3,592,731	-		PFR28_03091	0.21	-0.6
3,592,731	-		PFR28_03091	0.21	-0.6
3,592,731	-		PFR28_03091	0.21	-1.2
3,592,731	-		PFR28_03091	0.21	+0.2
3,592,732	+		PFR28_03091	0.21	+0.6
3,592,733	-		PFR28_03091	0.21	+0.9
3,592,833	-		PFR28_03091	0.29	-1.6
3,592,833	-		PFR28_03091	0.29	+0.0
3,592,833	-		PFR28_03091	0.29	-0.4
3,592,833	-		PFR28_03091	0.29	-0.7
3,592,833	-		PFR28_03091	0.29	+0.3
3,592,833	-		PFR28_03091	0.29	+0.5
3,592,833	-		PFR28_03091	0.29	-0.3
3,592,859	+		PFR28_03091	0.31	+1.4
3,592,964	+		PFR28_03091	0.39	+0.5
3,592,964	+		PFR28_03091	0.39	-0.6
3,592,964	+		PFR28_03091	0.39	-1.4
3,592,964	+		PFR28_03091	0.39	+0.8
3,592,965	-		PFR28_03091	0.39	-1.0
3,592,989	+		PFR28_03091	0.41	-1.0
3,593,045	+		PFR28_03091	0.45	-0.2
3,593,045	+		PFR28_03091	0.45	-0.8
3,593,045	+		PFR28_03091	0.45	-1.2
3,593,046	-		PFR28_03091	0.45	-0.2
3,593,046	-		PFR28_03091	0.45	-1.6
3,593,046	-		PFR28_03091	0.45	-1.6
3,593,046	-		PFR28_03091	0.45	-0.6
3,593,192	+		PFR28_03091	0.56	-1.5
3,593,192	+		PFR28_03091	0.56	-1.4
3,593,193	-		PFR28_03091	0.56	-0.7
3,593,193	-		PFR28_03091	0.56	-1.0
3,593,193	-		PFR28_03091	0.56	-0.2
3,593,231	+		PFR28_03091	0.59	-0.7
3,593,231	+		PFR28_03091	0.59	+1.0
3,593,231	+		PFR28_03091	0.59	-1.3
3,593,232	-		PFR28_03091	0.59	-1.0
3,593,232	-		PFR28_03091	0.59	-0.3
3,593,387	+		PFR28_03091	0.71	+0.5
3,593,387	+		PFR28_03091	0.71	+0.7
3,593,387	+		PFR28_03091	0.71	-0.1
3,593,388	-		PFR28_03091	0.71	-0.7
3,593,388	-		PFR28_03091	0.71	-1.1
3,593,399	+		PFR28_03091	0.72	+1.0
3,593,399	+		PFR28_03091	0.72	+0.6
3,593,504	+		PFR28_03091	0.80	-0.4
3,593,504	+		PFR28_03091	0.80	+0.3
3,593,694	+				-0.4
3,593,695	-				+0.0
3,593,800	-				-0.2
3,593,817	-				-0.8
3,593,844	+				-1.0
3,593,905	+				+0.3
3,593,939	-				+0.0
3,593,951	-				-0.9
3,593,981	+				-0.5
3,593,981	+				-0.4
3,593,981	+				-1.1
3,593,985	+				-0.5
3,593,986	-				+0.9
3,593,986	-				+0.5
3,594,014	+				-0.5
3,594,014	+				-0.5
3,594,015	-				+0.9
3,594,097	+				+0.8
3,594,144	+				-0.2
3,594,144	+				-1.5
3,594,164	+				+0.2
3,594,164	+				-0.4
3,594,164	+				-0.7
3,594,164	+				-0.3
3,594,164	+				-1.3
3,594,165	-				+3.0
3,594,165	-				-0.1
3,594,165	-				+0.9
3,594,165	-				+1.1
3,594,183	+				+0.2
3,594,183	+				+0.1
3,594,183	+				+0.9
3,594,184	-				-0.1
3,594,184	-				-0.6
3,594,184	-				-0.1
3,594,202	+				-1.4
3,594,202	+				-0.4
3,594,202	+				+0.8
3,594,202	+				-1.3
3,594,203	-				+0.4
3,594,203	-				+0.9
3,594,203	-				+0.4
3,594,203	-				-0.8
3,594,229	+				+1.3
3,594,229	+				+1.0
3,594,229	+				-0.5
3,594,229	+				-1.5
3,594,229	+				-0.1
3,594,229	+				-1.0
3,594,229	+				-0.4
3,594,229	+				-1.0
3,594,230	-				-1.7
3,594,230	-				-0.6
3,594,230	-				-1.3
3,594,230	-				+0.4
3,594,307	+				+0.5
3,594,307	+				+0.7
3,594,307	+				-2.4
3,594,308	-				+0.5
3,594,308	-				+0.2
3,594,308	-				+1.9
3,594,308	-				-0.6
3,594,308	-				-1.3