Experiment: caffeic (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00898 and PFR28_00899 are separated by 361 nucleotides PFR28_00899 and PFR28_00900 are separated by 185 nucleotides PFR28_00900 and PFR28_00901 are separated by 4 nucleotides
PFR28_00898: PFR28_00898 - hypothetical protein, at 975,940 to 976,866
_00898
PFR28_00899: PFR28_00899 - putative oxidoreductase YciK, at 977,228 to 977,968
_00899
PFR28_00900: PFR28_00900 - N-acetylmuramic acid 6-phosphate phosphatase, at 978,154 to 978,825
_00900
PFR28_00901: PFR28_00901 - Ubiquinone biosynthesis O-methyltransferase, at 978,830 to 979,528
_00901
Position (kb) 977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 976.255 kb on + strand, within PFR28_00898 at 976.255 kb on + strand, within PFR28_00898 at 976.255 kb on + strand, within PFR28_00898 at 976.255 kb on + strand, within PFR28_00898 at 976.255 kb on + strand, within PFR28_00898 at 976.255 kb on + strand, within PFR28_00898 at 976.256 kb on - strand, within PFR28_00898 at 976.256 kb on - strand, within PFR28_00898 at 976.256 kb on - strand, within PFR28_00898 at 976.341 kb on + strand, within PFR28_00898 at 976.341 kb on + strand, within PFR28_00898 at 976.341 kb on + strand, within PFR28_00898 at 976.341 kb on + strand, within PFR28_00898 at 976.341 kb on + strand, within PFR28_00898 at 976.342 kb on - strand, within PFR28_00898 at 976.583 kb on + strand, within PFR28_00898 at 976.583 kb on + strand, within PFR28_00898 at 976.583 kb on + strand, within PFR28_00898 at 976.584 kb on - strand, within PFR28_00898 at 976.842 kb on + strand at 976.842 kb on + strand at 976.842 kb on + strand at 976.843 kb on - strand at 976.843 kb on - strand at 976.873 kb on + strand at 976.874 kb on - strand at 976.932 kb on + strand at 976.932 kb on + strand at 976.932 kb on + strand at 976.932 kb on + strand at 976.932 kb on + strand at 976.970 kb on + strand at 976.970 kb on + strand at 976.970 kb on + strand at 976.971 kb on - strand at 976.971 kb on - strand at 976.971 kb on - strand at 976.986 kb on + strand at 976.986 kb on + strand at 976.987 kb on - strand at 977.045 kb on - strand at 977.048 kb on + strand at 977.115 kb on + strand at 977.115 kb on + strand at 977.229 kb on + strand at 977.959 kb on - strand at 977.969 kb on - strand at 977.969 kb on - strand at 977.969 kb on - strand at 977.969 kb on - strand at 978.190 kb on + strand at 978.190 kb on + strand at 978.190 kb on + strand at 978.191 kb on - strand at 978.191 kb on - strand at 978.191 kb on - strand at 978.257 kb on + strand, within PFR28_00900 at 978.257 kb on + strand, within PFR28_00900 at 978.258 kb on - strand, within PFR28_00900 at 978.258 kb on - strand, within PFR28_00900 at 978.258 kb on - strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.263 kb on + strand, within PFR28_00900 at 978.264 kb on - strand, within PFR28_00900 at 978.264 kb on - strand, within PFR28_00900 at 978.593 kb on + strand, within PFR28_00900 at 978.669 kb on + strand, within PFR28_00900 at 978.669 kb on + strand, within PFR28_00900 at 978.831 kb on + strand at 978.831 kb on + strand at 978.831 kb on + strand at 978.832 kb on - strand at 978.832 kb on - strand at 978.832 kb on - strand at 978.832 kb on - strand at 978.832 kb on - strand at 978.832 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction caffeic (C) 2.5 mM remove 976,255 + PFR28_00898 0.34 -0.3 976,255 + PFR28_00898 0.34 -0.7 976,255 + PFR28_00898 0.34 +3.0 976,255 + PFR28_00898 0.34 -0.6 976,255 + PFR28_00898 0.34 -1.2 976,255 + PFR28_00898 0.34 -0.4 976,256 - PFR28_00898 0.34 -0.8 976,256 - PFR28_00898 0.34 -2.2 976,256 - PFR28_00898 0.34 -1.2 976,341 + PFR28_00898 0.43 -1.1 976,341 + PFR28_00898 0.43 -0.3 976,341 + PFR28_00898 0.43 +0.2 976,341 + PFR28_00898 0.43 -1.8 976,341 + PFR28_00898 0.43 -2.0 976,342 - PFR28_00898 0.43 -1.6 976,583 + PFR28_00898 0.69 -2.0 976,583 + PFR28_00898 0.69 -1.7 976,583 + PFR28_00898 0.69 -1.1 976,584 - PFR28_00898 0.69 -0.0 976,842 + -0.4 976,842 + -1.4 976,842 + -0.9 976,843 - -1.8 976,843 - +0.5 976,873 + -1.4 976,874 - -1.1 976,932 + -1.9 976,932 + -1.4 976,932 + -2.2 976,932 + -1.5 976,932 + -1.9 976,970 + -1.2 976,970 + -1.0 976,970 + -1.4 976,971 - -1.5 976,971 - +0.2 976,971 - -1.0 976,986 + -1.2 976,986 + -0.4 976,987 - -1.7 977,045 - -1.1 977,048 + +0.5 977,115 + -0.0 977,115 + -1.2 977,229 + -0.8 977,959 - +0.2 977,969 - +1.7 977,969 - -0.3 977,969 - -0.0 977,969 - +2.0 978,190 + +0.1 978,190 + -0.2 978,190 + +2.6 978,191 - -0.2 978,191 - -0.0 978,191 - -0.0 978,257 + PFR28_00900 0.15 -0.7 978,257 + PFR28_00900 0.15 -1.7 978,258 - PFR28_00900 0.15 +0.1 978,258 - PFR28_00900 0.15 +1.6 978,258 - PFR28_00900 0.15 -1.1 978,263 + PFR28_00900 0.16 -0.6 978,263 + PFR28_00900 0.16 -1.3 978,263 + PFR28_00900 0.16 -1.5 978,263 + PFR28_00900 0.16 -0.4 978,263 + PFR28_00900 0.16 -1.0 978,263 + PFR28_00900 0.16 -0.9 978,263 + PFR28_00900 0.16 -3.1 978,264 - PFR28_00900 0.16 +2.0 978,264 - PFR28_00900 0.16 -0.3 978,593 + PFR28_00900 0.65 -2.0 978,669 + PFR28_00900 0.77 -2.0 978,669 + PFR28_00900 0.77 -1.3 978,831 + +1.0 978,831 + -2.2 978,831 + -1.2 978,832 - -1.6 978,832 - -0.1 978,832 - +0.4 978,832 - +0.1 978,832 - +0.5 978,832 - -0.2
Or see this region's nucleotide sequence