Strain Fitness in Pseudomonas sp. RS175 around PFR28_00189

Experiment: caffeic (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00188 and PFR28_00189 are separated by 84 nucleotidesPFR28_00189 and PFR28_00190 are separated by 12 nucleotides PFR28_00188: PFR28_00188 - Histidinol-phosphate aminotransferase, at 210,382 to 211,434 _00188 PFR28_00189: PFR28_00189 - hypothetical protein, at 211,519 to 212,238 _00189 PFR28_00190: PFR28_00190 - Metal-pseudopaline receptor CntO, at 212,251 to 214,356 _00190 Position (kb) 211 212 213Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 210.596 kb on - strand, within PFR28_00188at 210.598 kb on + strand, within PFR28_00188at 210.598 kb on + strand, within PFR28_00188at 210.599 kb on - strand, within PFR28_00188at 210.599 kb on - strand, within PFR28_00188at 210.599 kb on - strand, within PFR28_00188at 210.599 kb on - strand, within PFR28_00188at 210.620 kb on + strand, within PFR28_00188at 210.620 kb on + strand, within PFR28_00188at 210.621 kb on - strand, within PFR28_00188at 210.712 kb on + strand, within PFR28_00188at 210.712 kb on + strand, within PFR28_00188at 210.712 kb on + strand, within PFR28_00188at 210.713 kb on - strand, within PFR28_00188at 210.722 kb on - strand, within PFR28_00188at 210.730 kb on + strand, within PFR28_00188at 210.730 kb on + strand, within PFR28_00188at 210.730 kb on + strand, within PFR28_00188at 210.731 kb on - strand, within PFR28_00188at 210.731 kb on - strand, within PFR28_00188at 210.742 kb on + strand, within PFR28_00188at 210.742 kb on + strand, within PFR28_00188at 210.742 kb on + strand, within PFR28_00188at 210.742 kb on + strand, within PFR28_00188at 210.743 kb on - strand, within PFR28_00188at 210.743 kb on - strand, within PFR28_00188at 210.743 kb on - strand, within PFR28_00188at 210.743 kb on - strand, within PFR28_00188at 210.802 kb on + strand, within PFR28_00188at 210.802 kb on + strand, within PFR28_00188at 210.802 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 211.106 kb on - strand, within PFR28_00188at 211.162 kb on + strand, within PFR28_00188at 211.163 kb on - strand, within PFR28_00188at 211.561 kb on + strandat 211.562 kb on - strandat 211.562 kb on - strandat 211.753 kb on + strand, within PFR28_00189at 211.754 kb on - strand, within PFR28_00189at 211.754 kb on - strand, within PFR28_00189at 211.783 kb on + strand, within PFR28_00189at 211.822 kb on + strand, within PFR28_00189at 211.874 kb on + strand, within PFR28_00189at 211.874 kb on + strand, within PFR28_00189at 212.072 kb on + strand, within PFR28_00189at 212.073 kb on - strand, within PFR28_00189at 212.073 kb on - strand, within PFR28_00189at 212.112 kb on + strand, within PFR28_00189at 212.112 kb on + strand, within PFR28_00189at 212.112 kb on + strand, within PFR28_00189at 212.132 kb on + strand, within PFR28_00189at 212.132 kb on + strand, within PFR28_00189at 212.132 kb on + strand, within PFR28_00189at 212.132 kb on + strand, within PFR28_00189at 212.132 kb on + strand, within PFR28_00189at 212.132 kb on + strand, within PFR28_00189at 212.133 kb on - strand, within PFR28_00189at 212.133 kb on - strand, within PFR28_00189at 212.133 kb on - strand, within PFR28_00189at 212.133 kb on - strand, within PFR28_00189at 212.133 kb on - strand, within PFR28_00189at 212.133 kb on - strand, within PFR28_00189at 212.252 kb on + strandat 212.252 kb on + strandat 212.252 kb on + strandat 212.253 kb on - strandat 212.254 kb on + strandat 212.254 kb on + strandat 212.255 kb on - strandat 212.255 kb on - strandat 212.309 kb on + strandat 212.309 kb on + strandat 212.310 kb on - strandat 212.318 kb on + strandat 212.318 kb on + strandat 212.318 kb on + strandat 212.318 kb on + strandat 212.319 kb on - strandat 212.319 kb on - strandat 212.319 kb on - strandat 212.331 kb on - strandat 212.333 kb on + strandat 212.334 kb on - strandat 212.334 kb on - strandat 212.393 kb on + strandat 212.393 kb on + strandat 212.393 kb on + strandat 212.393 kb on + strandat 212.393 kb on + strandat 212.393 kb on + strandat 212.394 kb on - strandat 212.394 kb on - strandat 212.394 kb on - strandat 212.394 kb on - strandat 212.394 kb on - strandat 212.394 kb on - strandat 212.420 kb on + strandat 212.471 kb on + strand, within PFR28_00190at 212.471 kb on + strand, within PFR28_00190at 212.471 kb on + strand, within PFR28_00190at 212.472 kb on - strand, within PFR28_00190at 212.472 kb on - strand, within PFR28_00190at 212.472 kb on - strand, within PFR28_00190at 212.525 kb on + strand, within PFR28_00190at 212.525 kb on + strand, within PFR28_00190at 212.525 kb on + strand, within PFR28_00190at 212.526 kb on - strand, within PFR28_00190at 212.526 kb on - strand, within PFR28_00190at 212.526 kb on - strand, within PFR28_00190at 212.526 kb on - strand, within PFR28_00190at 212.526 kb on - strand, within PFR28_00190at 212.526 kb on - strand, within PFR28_00190at 212.527 kb on + strand, within PFR28_00190at 212.528 kb on - strand, within PFR28_00190at 212.528 kb on - strand, within PFR28_00190at 212.528 kb on - strand, within PFR28_00190at 212.528 kb on - strand, within PFR28_00190at 212.621 kb on + strand, within PFR28_00190at 212.621 kb on + strand, within PFR28_00190at 212.622 kb on - strand, within PFR28_00190at 212.622 kb on - strand, within PFR28_00190at 212.758 kb on + strand, within PFR28_00190at 212.758 kb on + strand, within PFR28_00190at 212.758 kb on + strand, within PFR28_00190at 212.758 kb on + strand, within PFR28_00190at 212.758 kb on + strand, within PFR28_00190at 212.758 kb on + strand, within PFR28_00190at 212.758 kb on + strand, within PFR28_00190at 212.758 kb on + strand, within PFR28_00190at 212.758 kb on + strand, within PFR28_00190at 212.758 kb on + strand, within PFR28_00190at 212.758 kb on + strand, within PFR28_00190at 212.758 kb on + strand, within PFR28_00190at 212.759 kb on - strand, within PFR28_00190at 212.759 kb on - strand, within PFR28_00190at 212.759 kb on - strand, within PFR28_00190at 212.759 kb on - strand, within PFR28_00190at 212.759 kb on - strand, within PFR28_00190at 212.759 kb on - strand, within PFR28_00190at 212.759 kb on - strand, within PFR28_00190at 212.760 kb on + strand, within PFR28_00190at 212.760 kb on + strand, within PFR28_00190at 212.760 kb on + strand, within PFR28_00190at 212.825 kb on + strand, within PFR28_00190at 212.936 kb on + strand, within PFR28_00190at 212.936 kb on + strand, within PFR28_00190at 212.936 kb on + strand, within PFR28_00190at 212.937 kb on - strand, within PFR28_00190at 212.937 kb on - strand, within PFR28_00190at 212.937 kb on - strand, within PFR28_00190at 212.937 kb on - strand, within PFR28_00190at 212.937 kb on - strand, within PFR28_00190at 213.029 kb on + strand, within PFR28_00190at 213.034 kb on + strand, within PFR28_00190at 213.035 kb on - strand, within PFR28_00190at 213.158 kb on + strand, within PFR28_00190at 213.159 kb on - strand, within PFR28_00190at 213.170 kb on + strand, within PFR28_00190at 213.170 kb on + strand, within PFR28_00190at 213.170 kb on + strand, within PFR28_00190at 213.170 kb on + strand, within PFR28_00190at 213.170 kb on + strand, within PFR28_00190at 213.170 kb on + strand, within PFR28_00190at 213.170 kb on + strand, within PFR28_00190at 213.170 kb on + strand, within PFR28_00190at 213.170 kb on + strand, within PFR28_00190at 213.171 kb on - strand, within PFR28_00190at 213.171 kb on - strand, within PFR28_00190at 213.171 kb on - strand, within PFR28_00190at 213.171 kb on - strand, within PFR28_00190at 213.171 kb on - strand, within PFR28_00190at 213.171 kb on - strand, within PFR28_00190at 213.171 kb on - strand, within PFR28_00190at 213.171 kb on - strand, within PFR28_00190at 213.171 kb on - strand, within PFR28_00190at 213.171 kb on - strand, within PFR28_00190at 213.171 kb on - strand, within PFR28_00190at 213.227 kb on + strand, within PFR28_00190at 213.227 kb on + strand, within PFR28_00190at 213.227 kb on + strand, within PFR28_00190at 213.228 kb on - strand, within PFR28_00190at 213.236 kb on + strand, within PFR28_00190at 213.236 kb on + strand, within PFR28_00190at 213.237 kb on - strand, within PFR28_00190at 213.237 kb on - strand, within PFR28_00190at 213.237 kb on - strand, within PFR28_00190at 213.237 kb on - strand, within PFR28_00190

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Per-strain Table

Position Strand Gene LocusTag Fraction caffeic (C) 2.5 mM
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210,596 - PFR28_00188 0.20 -2.7
210,598 + PFR28_00188 0.21 -2.7
210,598 + PFR28_00188 0.21 -3.3
210,599 - PFR28_00188 0.21 -3.7
210,599 - PFR28_00188 0.21 -2.4
210,599 - PFR28_00188 0.21 -3.2
210,599 - PFR28_00188 0.21 -1.9
210,620 + PFR28_00188 0.23 -4.0
210,620 + PFR28_00188 0.23 -2.7
210,621 - PFR28_00188 0.23 -2.7
210,712 + PFR28_00188 0.31 -0.8
210,712 + PFR28_00188 0.31 -0.5
210,712 + PFR28_00188 0.31 -0.4
210,713 - PFR28_00188 0.31 -3.0
210,722 - PFR28_00188 0.32 -4.9
210,730 + PFR28_00188 0.33 -1.5
210,730 + PFR28_00188 0.33 -5.1
210,730 + PFR28_00188 0.33 -2.8
210,731 - PFR28_00188 0.33 -3.2
210,731 - PFR28_00188 0.33 -3.1
210,742 + PFR28_00188 0.34 -1.6
210,742 + PFR28_00188 0.34 -1.7
210,742 + PFR28_00188 0.34 -2.1
210,742 + PFR28_00188 0.34 -2.8
210,743 - PFR28_00188 0.34 -3.7
210,743 - PFR28_00188 0.34 -3.0
210,743 - PFR28_00188 0.34 -2.1
210,743 - PFR28_00188 0.34 -2.0
210,802 + PFR28_00188 0.40 -4.2
210,802 + PFR28_00188 0.40 -3.8
210,802 + PFR28_00188 0.40 -0.9
210,931 + PFR28_00188 0.52 -2.5
210,931 + PFR28_00188 0.52 -0.1
210,931 + PFR28_00188 0.52 -0.8
210,931 + PFR28_00188 0.52 +0.4
210,931 + PFR28_00188 0.52 -2.6
210,931 + PFR28_00188 0.52 -3.6
210,931 + PFR28_00188 0.52 -2.2
210,931 + PFR28_00188 0.52 -2.7
210,931 + PFR28_00188 0.52 -0.6
210,931 + PFR28_00188 0.52 -4.8
210,932 - PFR28_00188 0.52 -2.5
210,932 - PFR28_00188 0.52 -3.0
210,932 - PFR28_00188 0.52 -1.8
210,932 - PFR28_00188 0.52 -3.0
210,932 - PFR28_00188 0.52 -2.9
210,932 - PFR28_00188 0.52 -5.0
210,932 - PFR28_00188 0.52 -3.0
211,106 - PFR28_00188 0.69 -1.8
211,162 + PFR28_00188 0.74 -3.0
211,163 - PFR28_00188 0.74 +0.2
211,561 + -0.2
211,562 - +0.6
211,562 - +0.8
211,753 + PFR28_00189 0.33 -0.2
211,754 - PFR28_00189 0.33 -0.3
211,754 - PFR28_00189 0.33 -0.4
211,783 + PFR28_00189 0.37 -0.1
211,822 + PFR28_00189 0.42 +0.6
211,874 + PFR28_00189 0.49 -0.9
211,874 + PFR28_00189 0.49 -1.0
212,072 + PFR28_00189 0.77 +1.1
212,073 - PFR28_00189 0.77 +1.2
212,073 - PFR28_00189 0.77 -0.2
212,112 + PFR28_00189 0.82 -0.3
212,112 + PFR28_00189 0.82 -0.8
212,112 + PFR28_00189 0.82 -0.5
212,132 + PFR28_00189 0.85 +0.7
212,132 + PFR28_00189 0.85 -0.3
212,132 + PFR28_00189 0.85 -0.8
212,132 + PFR28_00189 0.85 -1.4
212,132 + PFR28_00189 0.85 -1.0
212,132 + PFR28_00189 0.85 -0.4
212,133 - PFR28_00189 0.85 -0.3
212,133 - PFR28_00189 0.85 -0.8
212,133 - PFR28_00189 0.85 +0.5
212,133 - PFR28_00189 0.85 +0.5
212,133 - PFR28_00189 0.85 -1.5
212,133 - PFR28_00189 0.85 -0.1
212,252 + +0.6
212,252 + +0.6
212,252 + +0.0
212,253 - -1.4
212,254 + -0.1
212,254 + +0.2
212,255 - -0.1
212,255 - -0.1
212,309 + -0.5
212,309 + -0.2
212,310 - +0.1
212,318 + -0.5
212,318 + +1.2
212,318 + +1.2
212,318 + -0.7
212,319 - +1.3
212,319 - -0.5
212,319 - +0.2
212,331 - -2.4
212,333 + +0.1
212,334 - -0.1
212,334 - +0.2
212,393 + -0.9
212,393 + -0.1
212,393 + -0.3
212,393 + -0.3
212,393 + +0.4
212,393 + -0.7
212,394 - +0.6
212,394 - +0.9
212,394 - -0.8
212,394 - +0.2
212,394 - -0.5
212,394 - -0.5
212,420 + -0.4
212,471 + PFR28_00190 0.10 +1.1
212,471 + PFR28_00190 0.10 -1.4
212,471 + PFR28_00190 0.10 +0.7
212,472 - PFR28_00190 0.10 -0.4
212,472 - PFR28_00190 0.10 +0.8
212,472 - PFR28_00190 0.10 +2.2
212,525 + PFR28_00190 0.13 +0.6
212,525 + PFR28_00190 0.13 -0.2
212,525 + PFR28_00190 0.13 +0.9
212,526 - PFR28_00190 0.13 +1.2
212,526 - PFR28_00190 0.13 -0.7
212,526 - PFR28_00190 0.13 +0.6
212,526 - PFR28_00190 0.13 -0.2
212,526 - PFR28_00190 0.13 +1.4
212,526 - PFR28_00190 0.13 +1.6
212,527 + PFR28_00190 0.13 +0.6
212,528 - PFR28_00190 0.13 -0.8
212,528 - PFR28_00190 0.13 -1.4
212,528 - PFR28_00190 0.13 +1.2
212,528 - PFR28_00190 0.13 -2.9
212,621 + PFR28_00190 0.18 +0.1
212,621 + PFR28_00190 0.18 -1.0
212,622 - PFR28_00190 0.18 +1.0
212,622 - PFR28_00190 0.18 -1.4
212,758 + PFR28_00190 0.24 +3.8
212,758 + PFR28_00190 0.24 +1.4
212,758 + PFR28_00190 0.24 -0.1
212,758 + PFR28_00190 0.24 +0.3
212,758 + PFR28_00190 0.24 -0.0
212,758 + PFR28_00190 0.24 -1.0
212,758 + PFR28_00190 0.24 +2.1
212,758 + PFR28_00190 0.24 +1.3
212,758 + PFR28_00190 0.24 +1.4
212,758 + PFR28_00190 0.24 +0.6
212,758 + PFR28_00190 0.24 -0.4
212,758 + PFR28_00190 0.24 -1.6
212,759 - PFR28_00190 0.24 +1.1
212,759 - PFR28_00190 0.24 -1.0
212,759 - PFR28_00190 0.24 +1.0
212,759 - PFR28_00190 0.24 +0.4
212,759 - PFR28_00190 0.24 -0.3
212,759 - PFR28_00190 0.24 +0.3
212,759 - PFR28_00190 0.24 -0.2
212,760 + PFR28_00190 0.24 +0.4
212,760 + PFR28_00190 0.24 +0.7
212,760 + PFR28_00190 0.24 -0.1
212,825 + PFR28_00190 0.27 -0.8
212,936 + PFR28_00190 0.33 +0.5
212,936 + PFR28_00190 0.33 +0.7
212,936 + PFR28_00190 0.33 -0.3
212,937 - PFR28_00190 0.33 -0.2
212,937 - PFR28_00190 0.33 +0.0
212,937 - PFR28_00190 0.33 +0.0
212,937 - PFR28_00190 0.33 +0.2
212,937 - PFR28_00190 0.33 +0.3
213,029 + PFR28_00190 0.37 -0.7
213,034 + PFR28_00190 0.37 +0.9
213,035 - PFR28_00190 0.37 +0.0
213,158 + PFR28_00190 0.43 -0.2
213,159 - PFR28_00190 0.43 +0.5
213,170 + PFR28_00190 0.44 -1.0
213,170 + PFR28_00190 0.44 +1.5
213,170 + PFR28_00190 0.44 -0.4
213,170 + PFR28_00190 0.44 +0.5
213,170 + PFR28_00190 0.44 +1.5
213,170 + PFR28_00190 0.44 +0.3
213,170 + PFR28_00190 0.44 -1.1
213,170 + PFR28_00190 0.44 -0.3
213,170 + PFR28_00190 0.44 +0.5
213,171 - PFR28_00190 0.44 -0.5
213,171 - PFR28_00190 0.44 +2.0
213,171 - PFR28_00190 0.44 -0.3
213,171 - PFR28_00190 0.44 +3.5
213,171 - PFR28_00190 0.44 -1.1
213,171 - PFR28_00190 0.44 -0.5
213,171 - PFR28_00190 0.44 +0.6
213,171 - PFR28_00190 0.44 +0.5
213,171 - PFR28_00190 0.44 -0.8
213,171 - PFR28_00190 0.44 +0.6
213,171 - PFR28_00190 0.44 -2.0
213,227 + PFR28_00190 0.46 +0.7
213,227 + PFR28_00190 0.46 +1.2
213,227 + PFR28_00190 0.46 +2.4
213,228 - PFR28_00190 0.46 -0.8
213,236 + PFR28_00190 0.47 +0.5
213,236 + PFR28_00190 0.47 -0.4
213,237 - PFR28_00190 0.47 +1.1
213,237 - PFR28_00190 0.47 -2.8
213,237 - PFR28_00190 0.47 -0.7
213,237 - PFR28_00190 0.47 -0.6

Or see this region's nucleotide sequence