Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF827

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF826 and GFF827 are separated by 214 nucleotidesGFF827 and GFF828 are separated by 2 nucleotides GFF826 - GTP-binding protein HflX, at 8,305 to 9,585 GFF826 GFF827 - HflK protein, at 9,800 to 11,059 GFF827 GFF828 - HflC protein, at 11,062 to 12,066 GFF828 Position (kb) 9 10 11 12Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 8.987 kb on + strand, within GFF826at 8.987 kb on + strand, within GFF826at 9.012 kb on - strand, within GFF826at 9.243 kb on - strand, within GFF826at 9.515 kb on + strandat 9.584 kb on - strandat 9.606 kb on + strandat 9.731 kb on + strandat 9.928 kb on + strand, within GFF827at 10.063 kb on - strand, within GFF827at 10.390 kb on + strand, within GFF827at 10.394 kb on + strand, within GFF827at 10.468 kb on + strand, within GFF827at 10.590 kb on - strand, within GFF827at 10.610 kb on + strand, within GFF827at 10.610 kb on + strand, within GFF827at 10.677 kb on - strand, within GFF827at 10.810 kb on + strand, within GFF827at 10.821 kb on + strand, within GFF827at 10.954 kb on + strandat 11.003 kb on - strandat 11.068 kb on - strandat 11.102 kb on + strandat 11.110 kb on + strandat 11.111 kb on - strandat 11.371 kb on + strand, within GFF828at 11.372 kb on - strand, within GFF828at 11.558 kb on + strand, within GFF828at 11.559 kb on - strand, within GFF828at 11.652 kb on + strand, within GFF828at 11.731 kb on + strand, within GFF828at 11.739 kb on + strand, within GFF828at 11.869 kb on - strand, within GFF828

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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8,987 + GFF826 0.53 -0.1
8,987 + GFF826 0.53 -0.6
9,012 - GFF826 0.55 -1.9
9,243 - GFF826 0.73 -4.2
9,515 + -2.1
9,584 - -0.9
9,606 + -0.6
9,731 + -0.4
9,928 + GFF827 0.10 +1.1
10,063 - GFF827 0.21 -2.0
10,390 + GFF827 0.47 -1.6
10,394 + GFF827 0.47 -1.0
10,468 + GFF827 0.53 -2.4
10,590 - GFF827 0.63 -2.8
10,610 + GFF827 0.64 -0.1
10,610 + GFF827 0.64 -1.8
10,677 - GFF827 0.70 -0.7
10,810 + GFF827 0.80 -1.4
10,821 + GFF827 0.81 +0.2
10,954 + -2.6
11,003 - -2.8
11,068 - -0.1
11,102 + -1.1
11,110 + -1.8
11,111 - -1.4
11,371 + GFF828 0.31 -0.1
11,372 - GFF828 0.31 -1.6
11,558 + GFF828 0.49 -0.3
11,559 - GFF828 0.49 +0.2
11,652 + GFF828 0.59 -3.0
11,731 + GFF828 0.67 +1.2
11,739 + GFF828 0.67 -2.1
11,869 - GFF828 0.80 -1.4

Or see this region's nucleotide sequence