Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF742

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF741 and GFF742 are separated by 346 nucleotidesGFF742 and GFF743 overlap by 4 nucleotidesGFF743 and GFF744 are separated by 375 nucleotides GFF741 - D-beta-hydroxybutyrate permease, at 100,242 to 100,667 GFF741 GFF742 - Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2), at 101,014 to 101,694 GFF742 GFF743 - Uncharacterized glutathione S-transferase-like protein, at 101,691 to 102,317 GFF743 GFF744 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 102,693 to 103,763 GFF744 Position (kb) 101 102Strain fitness (log2 ratio) -2 -1 0 1 2at 100.177 kb on + strandat 100.177 kb on + strandat 100.178 kb on - strandat 100.178 kb on - strandat 100.178 kb on - strandat 100.295 kb on + strand, within GFF741at 100.296 kb on - strand, within GFF741at 100.377 kb on + strand, within GFF741at 100.480 kb on - strand, within GFF741at 100.538 kb on + strand, within GFF741at 100.542 kb on + strand, within GFF741at 100.678 kb on - strandat 100.801 kb on - strandat 101.010 kb on + strandat 101.140 kb on + strand, within GFF742at 101.197 kb on + strand, within GFF742at 101.197 kb on + strand, within GFF742at 101.197 kb on + strand, within GFF742at 101.198 kb on - strand, within GFF742at 101.353 kb on + strand, within GFF742at 101.354 kb on - strand, within GFF742at 101.416 kb on + strand, within GFF742at 101.419 kb on + strand, within GFF742at 101.596 kb on - strand, within GFF742at 101.596 kb on - strand, within GFF742at 101.599 kb on + strand, within GFF742at 101.599 kb on + strand, within GFF742at 101.626 kb on + strand, within GFF742at 101.630 kb on + strandat 101.630 kb on + strandat 101.630 kb on + strandat 101.630 kb on + strandat 101.631 kb on - strandat 101.631 kb on - strandat 101.631 kb on - strandat 101.631 kb on - strandat 101.807 kb on - strand, within GFF743at 101.822 kb on + strand, within GFF743at 101.904 kb on - strand, within GFF743at 102.057 kb on - strand, within GFF743at 102.127 kb on - strand, within GFF743at 102.171 kb on - strand, within GFF743at 102.311 kb on + strandat 102.312 kb on - strandat 102.318 kb on - strandat 102.372 kb on - strandat 102.377 kb on + strandat 102.385 kb on - strandat 102.434 kb on + strandat 102.465 kb on + strandat 102.513 kb on - strandat 102.557 kb on + strandat 102.560 kb on + strandat 102.570 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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100,177 + -1.9
100,177 + +0.1
100,178 - +0.2
100,178 - +0.2
100,178 - -1.1
100,295 + GFF741 0.12 +0.4
100,296 - GFF741 0.13 +0.6
100,377 + GFF741 0.32 +0.2
100,480 - GFF741 0.56 -0.6
100,538 + GFF741 0.69 -0.4
100,542 + GFF741 0.70 +1.9
100,678 - -0.2
100,801 - -0.1
101,010 + -2.3
101,140 + GFF742 0.19 +1.1
101,197 + GFF742 0.27 +0.8
101,197 + GFF742 0.27 +0.9
101,197 + GFF742 0.27 +0.3
101,198 - GFF742 0.27 +1.0
101,353 + GFF742 0.50 +0.8
101,354 - GFF742 0.50 -0.1
101,416 + GFF742 0.59 +0.2
101,419 + GFF742 0.59 -0.4
101,596 - GFF742 0.85 +0.6
101,596 - GFF742 0.85 -0.1
101,599 + GFF742 0.86 -0.5
101,599 + GFF742 0.86 +0.6
101,626 + GFF742 0.90 -0.2
101,630 + -0.1
101,630 + +1.7
101,630 + -0.8
101,630 + -1.3
101,631 - -0.9
101,631 - -0.5
101,631 - -0.4
101,631 - -1.2
101,807 - GFF743 0.19 -0.3
101,822 + GFF743 0.21 -0.5
101,904 - GFF743 0.34 -0.6
102,057 - GFF743 0.58 +0.4
102,127 - GFF743 0.70 +0.1
102,171 - GFF743 0.77 +0.1
102,311 + -0.0
102,312 - +0.1
102,318 - -0.5
102,372 - -0.8
102,377 + -0.2
102,385 - +0.1
102,434 + -0.3
102,465 + +0.3
102,513 - -1.7
102,557 + +0.1
102,560 + +0.0
102,570 + +0.5

Or see this region's nucleotide sequence