Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3658

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3656 and GFF3657 are separated by 9 nucleotidesGFF3657 and GFF3658 are separated by 136 nucleotidesGFF3658 and GFF3659 are separated by 283 nucleotides GFF3656 - Pyruvate formate-lyase activating enzyme (EC 1.97.1.4), at 4,288 to 4,935 GFF3656 GFF3657 - hypothetical protein, at 4,945 to 5,076 GFF3657 GFF3658 - FIG01046987: hypothetical protein, at 5,213 to 5,377 GFF3658 GFF3659 - FIG01045244: hypothetical protein, at 5,661 to 6,620 GFF3659 Position (kb) 5 6Strain fitness (log2 ratio) -2 -1 0 1at 4.293 kb on - strandat 4.354 kb on - strand, within GFF3656at 4.405 kb on - strand, within GFF3656at 4.425 kb on - strand, within GFF3656at 4.452 kb on + strand, within GFF3656at 4.563 kb on - strand, within GFF3656at 4.842 kb on - strand, within GFF3656at 4.861 kb on + strand, within GFF3656at 4.862 kb on - strand, within GFF3656at 5.247 kb on - strand, within GFF3658at 5.247 kb on - strand, within GFF3658at 5.247 kb on - strand, within GFF3658at 5.355 kb on + strand, within GFF3658at 5.366 kb on + strandat 5.367 kb on - strandat 5.367 kb on - strandat 5.755 kb on + strandat 5.755 kb on + strandat 5.874 kb on - strand, within GFF3659at 6.281 kb on + strand, within GFF3659

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
remove
4,293 - +0.2
4,354 - GFF3656 0.10 -0.5
4,405 - GFF3656 0.18 +0.4
4,425 - GFF3656 0.21 -1.8
4,452 + GFF3656 0.25 -0.2
4,563 - GFF3656 0.42 +0.6
4,842 - GFF3656 0.85 -0.4
4,861 + GFF3656 0.88 -0.5
4,862 - GFF3656 0.89 -0.3
5,247 - GFF3658 0.21 -2.5
5,247 - GFF3658 0.21 -0.8
5,247 - GFF3658 0.21 -1.1
5,355 + GFF3658 0.86 +0.7
5,366 + +0.1
5,367 - -1.2
5,367 - +0.5
5,755 + -0.8
5,755 + +0.3
5,874 - GFF3659 0.22 +0.9
6,281 + GFF3659 0.65 -0.7

Or see this region's nucleotide sequence