Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF342

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF342 and GFF343 are separated by 111 nucleotides GFF342 - FIG01046502: hypothetical protein, at 60,023 to 60,196 GFF342 GFF343 - Putative DNA-binding protein in cluster with Type I restriction-modification system, at 60,308 to 61,345 GFF343 Position (kb) 60 61Strain fitness (log2 ratio) -2 -1 0 1at 59.479 kb on - strandat 59.578 kb on - strandat 59.831 kb on + strandat 59.924 kb on + strandat 60.054 kb on + strand, within GFF342at 60.260 kb on + strandat 60.404 kb on - strandat 60.406 kb on - strandat 60.578 kb on + strand, within GFF343at 60.579 kb on - strand, within GFF343at 60.644 kb on - strand, within GFF343at 60.644 kb on - strand, within GFF343at 60.663 kb on + strand, within GFF343at 60.728 kb on - strand, within GFF343at 60.804 kb on + strand, within GFF343at 61.088 kb on + strand, within GFF343at 61.118 kb on + strand, within GFF343at 61.119 kb on - strand, within GFF343at 61.164 kb on + strand, within GFF343at 61.165 kb on - strand, within GFF343at 61.174 kb on + strand, within GFF343at 61.174 kb on + strand, within GFF343at 61.174 kb on + strand, within GFF343at 61.175 kb on - strand, within GFF343at 61.186 kb on + strand, within GFF343

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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59,479 - -0.2
59,578 - +0.1
59,831 + -0.1
59,924 + +0.1
60,054 + GFF342 0.18 -1.8
60,260 + +0.3
60,404 - +0.3
60,406 - -0.4
60,578 + GFF343 0.26 +0.4
60,579 - GFF343 0.26 -0.4
60,644 - GFF343 0.32 -0.4
60,644 - GFF343 0.32 +0.8
60,663 + GFF343 0.34 -0.3
60,728 - GFF343 0.40 +0.2
60,804 + GFF343 0.48 +0.2
61,088 + GFF343 0.75 +0.1
61,118 + GFF343 0.78 +0.2
61,119 - GFF343 0.78 +1.4
61,164 + GFF343 0.82 -0.2
61,165 - GFF343 0.83 +0.5
61,174 + GFF343 0.83 +1.4
61,174 + GFF343 0.83 -0.5
61,174 + GFF343 0.83 -0.5
61,175 - GFF343 0.84 +0.2
61,186 + GFF343 0.85 +0.3

Or see this region's nucleotide sequence