Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2869

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2867 and GFF2868 are separated by 96 nucleotidesGFF2868 and GFF2869 are separated by 392 nucleotidesGFF2869 and GFF2870 are separated by 132 nucleotides GFF2867 - hypothetical protein, at 383,961 to 384,161 GFF2867 GFF2868 - hypothetical protein, at 384,258 to 384,386 GFF2868 GFF2869 - Permease of the drug/metabolite transporter (DMT) superfamily, at 384,779 to 385,693 GFF2869 GFF2870 - FIG01045658: hypothetical protein, at 385,826 to 385,984 GFF2870 Position (kb) 384 385 386Strain fitness (log2 ratio) -2 -1 0 1 2at 383.876 kb on - strandat 383.934 kb on + strandat 383.958 kb on + strandat 384.005 kb on + strand, within GFF2867at 384.053 kb on + strand, within GFF2867at 384.053 kb on + strand, within GFF2867at 384.144 kb on - strandat 384.315 kb on + strand, within GFF2868at 384.377 kb on + strandat 384.404 kb on - strandat 384.575 kb on + strandat 385.085 kb on - strand, within GFF2869at 385.344 kb on + strand, within GFF2869at 385.701 kb on - strandat 386.353 kb on + strandat 386.536 kb on + strandat 386.637 kb on + strandat 386.637 kb on + strandat 386.637 kb on + strandat 386.641 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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383,876 - -0.2
383,934 + +0.9
383,958 + +1.3
384,005 + GFF2867 0.22 -1.2
384,053 + GFF2867 0.46 -1.4
384,053 + GFF2867 0.46 -0.9
384,144 - +2.5
384,315 + GFF2868 0.44 -1.2
384,377 + +0.4
384,404 - +0.9
384,575 + +0.6
385,085 - GFF2869 0.33 -0.7
385,344 + GFF2869 0.62 -1.0
385,701 - -0.6
386,353 + +0.1
386,536 + -0.8
386,637 + -0.4
386,637 + -1.9
386,637 + -0.4
386,641 + -0.4

Or see this region's nucleotide sequence