Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2861

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2859 and GFF2860 are separated by 286 nucleotidesGFF2860 and GFF2861 are separated by 329 nucleotidesGFF2861 and GFF2862 are separated by 935 nucleotides GFF2859 - hypothetical protein, at 378,287 to 378,418 GFF2859 GFF2860 - FIG074102: hypothetical protein, at 378,705 to 379,085 GFF2860 GFF2861 - FIG01045929: hypothetical protein, at 379,415 to 379,891 GFF2861 GFF2862 - FIG01046381: hypothetical protein, at 380,827 to 381,021 GFF2862 Position (kb) 379 380Strain fitness (log2 ratio) -1 0 1at 379.316 kb on + strandat 379.348 kb on + strandat 379.348 kb on + strandat 379.471 kb on - strand, within GFF2861at 379.472 kb on + strand, within GFF2861at 379.478 kb on - strand, within GFF2861at 379.478 kb on - strand, within GFF2861at 379.494 kb on + strand, within GFF2861at 379.565 kb on - strand, within GFF2861at 379.609 kb on - strand, within GFF2861at 379.750 kb on - strand, within GFF2861at 379.952 kb on + strandat 379.995 kb on + strandat 379.997 kb on + strandat 380.051 kb on + strandat 380.063 kb on + strandat 380.127 kb on + strandat 380.128 kb on - strandat 380.131 kb on + strandat 380.131 kb on + strandat 380.131 kb on + strandat 380.150 kb on + strandat 380.151 kb on - strandat 380.256 kb on - strandat 380.281 kb on - strandat 380.319 kb on - strandat 380.351 kb on + strandat 380.354 kb on - strandat 380.847 kb on + strand, within GFF2862at 380.854 kb on - strand, within GFF2862

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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379,316 + -0.2
379,348 + -1.2
379,348 + -0.3
379,471 - GFF2861 0.12 -0.9
379,472 + GFF2861 0.12 +0.0
379,478 - GFF2861 0.13 -0.8
379,478 - GFF2861 0.13 -0.1
379,494 + GFF2861 0.17 -0.6
379,565 - GFF2861 0.31 -0.3
379,609 - GFF2861 0.41 -0.4
379,750 - GFF2861 0.70 -1.1
379,952 + -0.4
379,995 + -0.8
379,997 + -0.1
380,051 + -0.9
380,063 + -0.4
380,127 + +0.2
380,128 - +1.2
380,131 + +0.5
380,131 + +0.1
380,131 + +0.7
380,150 + +0.6
380,151 - +0.1
380,256 - -0.1
380,281 - -1.1
380,319 - -0.6
380,351 + -0.6
380,354 - -0.5
380,847 + GFF2862 0.10 +0.1
380,854 - GFF2862 0.14 -0.9

Or see this region's nucleotide sequence