Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2798

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2797 and GFF2798 are separated by 62 nucleotidesGFF2798 and GFF2799 are separated by 168 nucleotidesGFF2799 and GFF2800 are separated by 13 nucleotides GFF2797 - Trehalase (EC 3.2.1.28); Periplasmic trehalase precursor (EC 3.2.1.28), at 320,339 to 322,051 GFF2797 GFF2798 - UPF0410 protein YmgE, at 322,114 to 322,368 GFF2798 GFF2799 - Inner membrane protein, at 322,537 to 323,271 GFF2799 GFF2800 - Membrane-bound lytic murein transglycosylase E (EC 3.2.1.-), at 323,285 to 323,896 GFF2800 Position (kb) 322 323Strain fitness (log2 ratio) -1 0 1at 321.591 kb on + strand, within GFF2797at 321.592 kb on - strand, within GFF2797at 321.822 kb on - strand, within GFF2797at 321.984 kb on + strandat 322.060 kb on + strandat 322.270 kb on - strand, within GFF2798at 322.399 kb on + strandat 322.400 kb on - strandat 322.405 kb on + strandat 322.511 kb on - strandat 322.547 kb on - strandat 322.586 kb on + strandat 322.755 kb on + strand, within GFF2799at 322.883 kb on - strand, within GFF2799at 322.915 kb on + strand, within GFF2799at 322.952 kb on + strand, within GFF2799at 323.024 kb on + strand, within GFF2799at 323.025 kb on - strand, within GFF2799at 323.282 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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321,591 + GFF2797 0.73 +0.1
321,592 - GFF2797 0.73 +0.9
321,822 - GFF2797 0.87 +0.1
321,984 + +0.0
322,060 + -0.5
322,270 - GFF2798 0.61 -0.9
322,399 + -0.2
322,400 - +0.3
322,405 + -0.7
322,511 - -0.5
322,547 - +1.1
322,586 + -0.2
322,755 + GFF2799 0.30 +1.0
322,883 - GFF2799 0.47 -0.7
322,915 + GFF2799 0.51 +0.3
322,952 + GFF2799 0.56 -0.2
323,024 + GFF2799 0.66 +0.1
323,025 - GFF2799 0.66 +0.9
323,282 - +0.9

Or see this region's nucleotide sequence