Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2768

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2766 and GFF2767 are separated by 176 nucleotidesGFF2767 and GFF2768 are separated by 79 nucleotidesGFF2768 and GFF2769 are separated by 266 nucleotides GFF2766 - Invasin, at 291,991 to 293,415 GFF2766 GFF2767 - Putative ACR protein, at 293,592 to 293,945 GFF2767 GFF2768 - Cation transport regulator chaB, at 294,025 to 294,255 GFF2768 GFF2769 - Calcium/proton antiporter, at 294,522 to 295,622 GFF2769 Position (kb) 294 295Strain fitness (log2 ratio) -1 0 1at 293.049 kb on + strand, within GFF2766at 293.365 kb on - strandat 293.429 kb on - strandat 293.588 kb on - strandat 293.649 kb on - strand, within GFF2767at 293.649 kb on - strand, within GFF2767at 293.771 kb on + strand, within GFF2767at 294.168 kb on + strand, within GFF2768at 294.736 kb on - strand, within GFF2769at 294.751 kb on + strand, within GFF2769at 294.827 kb on + strand, within GFF2769at 294.828 kb on - strand, within GFF2769at 295.112 kb on + strand, within GFF2769at 295.117 kb on - strand, within GFF2769

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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293,049 + GFF2766 0.74 -0.2
293,365 - -0.2
293,429 - +0.6
293,588 - -0.3
293,649 - GFF2767 0.16 +0.6
293,649 - GFF2767 0.16 +0.2
293,771 + GFF2767 0.51 +0.7
294,168 + GFF2768 0.62 -0.6
294,736 - GFF2769 0.19 +0.4
294,751 + GFF2769 0.21 +0.7
294,827 + GFF2769 0.28 +0.0
294,828 - GFF2769 0.28 +0.3
295,112 + GFF2769 0.54 -1.2
295,117 - GFF2769 0.54 -0.1

Or see this region's nucleotide sequence