Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2765

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2764 and GFF2765 overlap by 8 nucleotidesGFF2765 and GFF2766 are separated by 0 nucleotides GFF2764 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 289,551 to 291,347 GFF2764 GFF2765 - Nitrate/nitrite response regulator protein, at 291,340 to 291,990 GFF2765 GFF2766 - Invasin, at 291,991 to 293,415 GFF2766 Position (kb) 291 292Strain fitness (log2 ratio) -1 0 1 2at 290.864 kb on - strand, within GFF2764at 290.864 kb on - strand, within GFF2764at 291.300 kb on - strandat 291.335 kb on + strandat 291.585 kb on + strand, within GFF2765at 291.656 kb on - strand, within GFF2765at 291.728 kb on + strand, within GFF2765at 291.728 kb on + strand, within GFF2765at 291.825 kb on + strand, within GFF2765at 291.919 kb on - strand, within GFF2765at 291.992 kb on + strandat 291.992 kb on + strandat 292.479 kb on + strand, within GFF2766at 292.480 kb on - strand, within GFF2766at 292.555 kb on + strand, within GFF2766at 292.565 kb on + strand, within GFF2766at 292.583 kb on - strand, within GFF2766at 292.679 kb on + strand, within GFF2766at 292.735 kb on + strand, within GFF2766at 292.779 kb on - strand, within GFF2766at 292.799 kb on + strand, within GFF2766at 292.862 kb on + strand, within GFF2766at 292.873 kb on - strand, within GFF2766at 292.976 kb on + strand, within GFF2766

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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290,864 - GFF2764 0.73 +0.1
290,864 - GFF2764 0.73 -0.5
291,300 - +1.4
291,335 + +1.6
291,585 + GFF2765 0.38 -0.2
291,656 - GFF2765 0.49 +1.5
291,728 + GFF2765 0.60 +0.9
291,728 + GFF2765 0.60 -0.5
291,825 + GFF2765 0.75 -0.1
291,919 - GFF2765 0.89 -0.5
291,992 + -0.1
291,992 + -0.3
292,479 + GFF2766 0.34 -1.3
292,480 - GFF2766 0.34 -1.4
292,555 + GFF2766 0.40 -0.2
292,565 + GFF2766 0.40 +0.1
292,583 - GFF2766 0.42 +0.9
292,679 + GFF2766 0.48 +2.7
292,735 + GFF2766 0.52 +0.5
292,779 - GFF2766 0.55 +0.8
292,799 + GFF2766 0.57 +0.1
292,862 + GFF2766 0.61 +0.2
292,873 - GFF2766 0.62 -0.1
292,976 + GFF2766 0.69 +0.6

Or see this region's nucleotide sequence