Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2610

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2608 and GFF2609 overlap by 1 nucleotidesGFF2609 and GFF2610 are separated by 46 nucleotidesGFF2610 and GFF2611 are separated by 11 nucleotidesGFF2611 and GFF2612 are separated by 204 nucleotides GFF2608 - Putative arylsulfatase regulatory protein, at 132,179 to 132,976 GFF2608 GFF2609 - 'Aminoglycoside 6'-N-acetyltransferase' transl_table=11, at 132,976 to 133,413 GFF2609 GFF2610 - Lactate 2-monooxygenase (EC 1.13.12.4), at 133,460 to 134,662 GFF2610 GFF2611 - FIG01200701: possible membrane protein, at 134,674 to 135,240 GFF2611 GFF2612 - Glucans biosynthesis protein D precursor, at 135,445 to 137,064 GFF2612 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1at 132.609 kb on - strand, within GFF2608at 132.609 kb on - strand, within GFF2608at 132.703 kb on + strand, within GFF2608at 132.704 kb on - strand, within GFF2608at 132.748 kb on + strand, within GFF2608at 132.749 kb on - strand, within GFF2608at 132.781 kb on + strand, within GFF2608at 132.782 kb on - strand, within GFF2608at 132.804 kb on + strand, within GFF2608at 132.837 kb on + strand, within GFF2608at 132.838 kb on - strand, within GFF2608at 132.871 kb on + strand, within GFF2608at 132.871 kb on + strand, within GFF2608at 132.884 kb on - strand, within GFF2608at 133.441 kb on - strandat 133.458 kb on + strandat 133.604 kb on - strand, within GFF2610at 133.793 kb on - strand, within GFF2610at 133.886 kb on - strand, within GFF2610at 133.892 kb on + strand, within GFF2610at 133.893 kb on - strand, within GFF2610at 133.893 kb on - strand, within GFF2610at 134.082 kb on - strand, within GFF2610at 134.595 kb on + strandat 134.706 kb on + strandat 135.279 kb on + strandat 135.507 kb on - strandat 135.507 kb on - strandat 135.552 kb on + strandat 135.552 kb on + strandat 135.552 kb on + strandat 135.552 kb on + strandat 135.553 kb on - strandat 135.553 kb on - strandat 135.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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132,609 - GFF2608 0.54 -0.5
132,609 - GFF2608 0.54 -0.8
132,703 + GFF2608 0.66 -0.4
132,704 - GFF2608 0.66 -0.5
132,748 + GFF2608 0.71 -0.4
132,749 - GFF2608 0.71 -0.0
132,781 + GFF2608 0.75 +0.3
132,782 - GFF2608 0.76 -0.4
132,804 + GFF2608 0.78 -0.3
132,837 + GFF2608 0.82 -0.3
132,838 - GFF2608 0.83 +1.5
132,871 + GFF2608 0.87 -2.5
132,871 + GFF2608 0.87 -0.5
132,884 - GFF2608 0.88 +0.7
133,441 - -1.1
133,458 + -1.9
133,604 - GFF2610 0.12 +0.2
133,793 - GFF2610 0.28 +0.2
133,886 - GFF2610 0.35 -0.9
133,892 + GFF2610 0.36 -1.1
133,893 - GFF2610 0.36 -2.2
133,893 - GFF2610 0.36 -1.8
134,082 - GFF2610 0.52 -0.3
134,595 + +0.1
134,706 + +0.3
135,279 + +0.0
135,507 - -1.3
135,507 - -0.1
135,552 + -1.7
135,552 + +0.1
135,552 + +0.4
135,552 + -0.6
135,553 - -0.5
135,553 - -0.0
135,606 + -0.7

Or see this region's nucleotide sequence