Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1246

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1245 and GFF1246 are separated by 421 nucleotidesGFF1246 and GFF1247 are separated by 344 nucleotides GFF1245 - FIG01046087: hypothetical protein, at 75,918 to 76,556 GFF1245 GFF1246 - RlgA, at 76,978 to 77,400 GFF1246 GFF1247 - Carbonic anhydrase (EC 4.2.1.1), at 77,745 to 78,485 GFF1247 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1at 76.018 kb on + strand, within GFF1245at 76.031 kb on - strand, within GFF1245at 76.182 kb on - strand, within GFF1245at 76.227 kb on + strand, within GFF1245at 76.227 kb on + strand, within GFF1245at 76.227 kb on + strand, within GFF1245at 76.228 kb on - strand, within GFF1245at 76.262 kb on - strand, within GFF1245at 76.262 kb on - strand, within GFF1245at 76.360 kb on + strand, within GFF1245at 76.360 kb on + strand, within GFF1245at 76.361 kb on - strand, within GFF1245at 76.372 kb on + strand, within GFF1245at 76.408 kb on - strand, within GFF1245at 76.494 kb on - strandat 76.555 kb on - strandat 76.617 kb on + strandat 76.634 kb on + strandat 76.729 kb on - strandat 76.869 kb on - strandat 76.873 kb on + strandat 76.873 kb on + strandat 76.873 kb on + strandat 76.947 kb on + strandat 76.947 kb on + strandat 77.012 kb on + strandat 77.076 kb on + strand, within GFF1246at 77.078 kb on + strand, within GFF1246at 77.078 kb on + strand, within GFF1246at 77.079 kb on - strand, within GFF1246at 77.079 kb on - strand, within GFF1246at 77.087 kb on + strand, within GFF1246at 77.088 kb on - strand, within GFF1246at 77.090 kb on - strand, within GFF1246at 77.090 kb on - strand, within GFF1246at 77.090 kb on - strand, within GFF1246at 77.105 kb on - strand, within GFF1246at 77.105 kb on - strand, within GFF1246at 77.127 kb on - strand, within GFF1246at 77.128 kb on + strand, within GFF1246at 77.215 kb on - strand, within GFF1246at 77.300 kb on + strand, within GFF1246at 77.300 kb on + strand, within GFF1246at 77.300 kb on + strand, within GFF1246at 77.301 kb on - strand, within GFF1246at 77.301 kb on - strand, within GFF1246at 77.365 kb on - strandat 77.449 kb on - strandat 77.491 kb on - strandat 77.528 kb on + strandat 77.529 kb on - strandat 77.539 kb on - strandat 77.567 kb on - strandat 77.700 kb on + strandat 77.747 kb on - strandat 77.786 kb on - strandat 77.789 kb on + strandat 77.790 kb on - strandat 77.916 kb on - strand, within GFF1247at 77.922 kb on - strand, within GFF1247at 78.002 kb on + strand, within GFF1247at 78.003 kb on - strand, within GFF1247at 78.102 kb on - strand, within GFF1247at 78.117 kb on - strand, within GFF1247at 78.201 kb on - strand, within GFF1247at 78.305 kb on + strand, within GFF1247

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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76,018 + GFF1245 0.16 +0.2
76,031 - GFF1245 0.18 -0.9
76,182 - GFF1245 0.41 +0.1
76,227 + GFF1245 0.48 -1.1
76,227 + GFF1245 0.48 +0.3
76,227 + GFF1245 0.48 -0.2
76,228 - GFF1245 0.49 +0.2
76,262 - GFF1245 0.54 -0.0
76,262 - GFF1245 0.54 -0.1
76,360 + GFF1245 0.69 +0.2
76,360 + GFF1245 0.69 +0.1
76,361 - GFF1245 0.69 -0.5
76,372 + GFF1245 0.71 -0.5
76,408 - GFF1245 0.77 +0.4
76,494 - -0.1
76,555 - +0.3
76,617 + +0.6
76,634 + -0.0
76,729 - -0.1
76,869 - +0.2
76,873 + -0.5
76,873 + +1.3
76,873 + -0.1
76,947 + +0.1
76,947 + +1.2
77,012 + +1.4
77,076 + GFF1246 0.23 -0.4
77,078 + GFF1246 0.24 -0.7
77,078 + GFF1246 0.24 -0.2
77,079 - GFF1246 0.24 -0.2
77,079 - GFF1246 0.24 +0.8
77,087 + GFF1246 0.26 +0.2
77,088 - GFF1246 0.26 -0.5
77,090 - GFF1246 0.26 +0.2
77,090 - GFF1246 0.26 -1.8
77,090 - GFF1246 0.26 -0.2
77,105 - GFF1246 0.30 +0.3
77,105 - GFF1246 0.30 -0.3
77,127 - GFF1246 0.35 -0.5
77,128 + GFF1246 0.35 +0.1
77,215 - GFF1246 0.56 +0.2
77,300 + GFF1246 0.76 -0.2
77,300 + GFF1246 0.76 -0.1
77,300 + GFF1246 0.76 -0.3
77,301 - GFF1246 0.76 -0.0
77,301 - GFF1246 0.76 -0.3
77,365 - -0.0
77,449 - -0.2
77,491 - -1.1
77,528 + -0.5
77,529 - -0.3
77,539 - +0.1
77,567 - -0.4
77,700 + -0.3
77,747 - -0.5
77,786 - +0.4
77,789 + -0.1
77,790 - -0.1
77,916 - GFF1247 0.23 -0.5
77,922 - GFF1247 0.24 -0.3
78,002 + GFF1247 0.35 -0.0
78,003 - GFF1247 0.35 -0.3
78,102 - GFF1247 0.48 -0.3
78,117 - GFF1247 0.50 -0.5
78,201 - GFF1247 0.62 -1.4
78,305 + GFF1247 0.76 +0.1

Or see this region's nucleotide sequence