Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF103

Experiment: LB_plus_SM_buffer with 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF101 and GFF102 are separated by 108 nucleotidesGFF102 and GFF103 are separated by 57 nucleotidesGFF103 and GFF104 are separated by 205 nucleotides GFF101 - ABC-type multidrug transport system, ATPase component, at 85,983 to 86,909 GFF101 GFF102 - Carbonic anhydrase (EC 4.2.1.1), at 87,018 to 87,680 GFF102 GFF103 - Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8), at 87,738 to 88,274 GFF103 GFF104 - Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2), at 88,480 to 90,870 GFF104 Position (kb) 87 88 89Strain fitness (log2 ratio) -2 -1 0 1at 86.760 kb on - strand, within GFF101at 86.922 kb on - strandat 86.945 kb on + strandat 86.946 kb on - strandat 86.946 kb on - strandat 86.992 kb on + strandat 87.663 kb on + strandat 87.679 kb on - strandat 87.686 kb on + strandat 87.690 kb on + strandat 87.690 kb on + strandat 87.691 kb on - strandat 87.691 kb on - strandat 87.693 kb on - strandat 87.701 kb on + strandat 87.701 kb on + strandat 87.769 kb on + strandat 87.770 kb on - strandat 87.897 kb on - strand, within GFF103at 87.956 kb on + strand, within GFF103at 87.956 kb on + strand, within GFF103at 87.956 kb on + strand, within GFF103at 87.972 kb on - strand, within GFF103at 87.999 kb on - strand, within GFF103at 88.137 kb on - strand, within GFF103at 88.190 kb on - strand, within GFF103at 88.223 kb on + strandat 88.322 kb on - strandat 88.325 kb on - strandat 88.355 kb on - strandat 88.432 kb on - strandat 88.434 kb on - strandat 88.479 kb on + strandat 88.512 kb on - strandat 88.650 kb on - strandat 88.793 kb on + strand, within GFF104

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 15 MOI
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86,760 - GFF101 0.84 -0.6
86,922 - +0.5
86,945 + +0.6
86,946 - +0.4
86,946 - -0.4
86,992 + -0.3
87,663 + -0.7
87,679 - +0.1
87,686 + -0.4
87,690 + +1.1
87,690 + -1.2
87,691 - +0.1
87,691 - +1.7
87,693 - +0.5
87,701 + +0.1
87,701 + -0.9
87,769 + -0.7
87,770 - -0.6
87,897 - GFF103 0.30 -0.2
87,956 + GFF103 0.41 -0.9
87,956 + GFF103 0.41 -1.2
87,956 + GFF103 0.41 -0.7
87,972 - GFF103 0.44 -1.8
87,999 - GFF103 0.49 -0.1
88,137 - GFF103 0.74 +0.0
88,190 - GFF103 0.84 -0.6
88,223 + -0.5
88,322 - +0.6
88,325 - -0.1
88,355 - -1.6
88,432 - -0.1
88,434 - +0.1
88,479 + +0.3
88,512 - +0.1
88,650 - +0.5
88,793 + GFF104 0.13 -0.6

Or see this region's nucleotide sequence