Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_836 and PfGW456L13_837 are separated by 409 nucleotides PfGW456L13_837 and PfGW456L13_838 are separated by 35 nucleotides PfGW456L13_838 and PfGW456L13_839 are separated by 213 nucleotides PfGW456L13_839 and PfGW456L13_840 are separated by 101 nucleotides
PfGW456L13_836 - FIG00953456: hypothetical protein, at 945,448 to 945,708
_836
PfGW456L13_837 - Nitrogen regulatory protein P-II, glnK, at 946,118 to 946,456
_837
PfGW456L13_838 - Ammonium transporter, at 946,492 to 947,829
_838
PfGW456L13_839 - FIG004064: hypothetical protein, at 948,043 to 948,468
_839
PfGW456L13_840 - FIG00953808: hypothetical protein, at 948,570 to 948,893
_840
Position (kb) 946
947
948 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 945.742 kb on - strand at 945.742 kb on - strand at 945.742 kb on - strand at 945.742 kb on - strand at 945.742 kb on - strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.755 kb on + strand at 945.756 kb on - strand at 945.756 kb on - strand at 945.756 kb on - strand at 945.756 kb on - strand at 945.756 kb on - strand at 945.756 kb on - strand at 945.757 kb on + strand at 945.757 kb on + strand at 945.757 kb on + strand at 945.757 kb on + strand at 945.758 kb on - strand at 945.824 kb on - strand at 945.831 kb on - strand at 945.920 kb on + strand at 946.454 kb on + strand at 946.454 kb on + strand at 946.454 kb on + strand at 946.455 kb on - strand at 946.491 kb on + strand at 946.491 kb on + strand at 946.492 kb on - strand at 946.492 kb on - strand at 946.492 kb on - strand at 946.492 kb on - strand at 946.538 kb on + strand at 946.538 kb on + strand at 946.666 kb on + strand, within PfGW456L13_838 at 946.666 kb on + strand, within PfGW456L13_838 at 946.666 kb on + strand, within PfGW456L13_838 at 946.666 kb on + strand, within PfGW456L13_838 at 946.666 kb on + strand, within PfGW456L13_838 at 946.666 kb on + strand, within PfGW456L13_838 at 946.667 kb on - strand, within PfGW456L13_838 at 946.756 kb on + strand, within PfGW456L13_838 at 946.756 kb on + strand, within PfGW456L13_838 at 946.756 kb on + strand, within PfGW456L13_838 at 946.756 kb on + strand, within PfGW456L13_838 at 946.756 kb on + strand, within PfGW456L13_838 at 946.756 kb on + strand, within PfGW456L13_838 at 946.757 kb on - strand, within PfGW456L13_838 at 946.757 kb on - strand, within PfGW456L13_838 at 946.757 kb on - strand, within PfGW456L13_838 at 946.757 kb on - strand, within PfGW456L13_838 at 946.757 kb on - strand, within PfGW456L13_838 at 946.757 kb on - strand, within PfGW456L13_838 at 946.757 kb on - strand, within PfGW456L13_838 at 946.757 kb on - strand, within PfGW456L13_838 at 946.762 kb on + strand, within PfGW456L13_838 at 946.762 kb on + strand, within PfGW456L13_838 at 946.762 kb on + strand, within PfGW456L13_838 at 946.762 kb on + strand, within PfGW456L13_838 at 947.007 kb on + strand, within PfGW456L13_838 at 947.007 kb on + strand, within PfGW456L13_838 at 947.026 kb on + strand, within PfGW456L13_838 at 947.026 kb on + strand, within PfGW456L13_838 at 947.026 kb on + strand, within PfGW456L13_838 at 947.026 kb on + strand, within PfGW456L13_838 at 947.026 kb on + strand, within PfGW456L13_838 at 947.026 kb on + strand, within PfGW456L13_838 at 947.027 kb on - strand, within PfGW456L13_838 at 947.027 kb on - strand, within PfGW456L13_838 at 947.027 kb on - strand, within PfGW456L13_838 at 947.027 kb on - strand, within PfGW456L13_838 at 947.132 kb on + strand, within PfGW456L13_838 at 947.133 kb on - strand, within PfGW456L13_838 at 947.133 kb on - strand, within PfGW456L13_838 at 947.133 kb on - strand, within PfGW456L13_838 at 947.133 kb on - strand, within PfGW456L13_838 at 947.212 kb on + strand, within PfGW456L13_838 at 947.213 kb on - strand, within PfGW456L13_838 at 947.383 kb on - strand, within PfGW456L13_838 at 947.471 kb on + strand, within PfGW456L13_838 at 947.471 kb on + strand, within PfGW456L13_838 at 947.701 kb on + strand at 947.701 kb on + strand at 947.701 kb on + strand at 947.701 kb on + strand at 947.701 kb on + strand at 947.701 kb on + strand at 947.701 kb on + strand at 947.701 kb on + strand at 947.701 kb on + strand at 947.702 kb on - strand at 947.702 kb on - strand at 947.702 kb on - strand at 947.702 kb on - strand at 947.702 kb on - strand at 947.715 kb on + strand at 947.715 kb on + strand at 947.715 kb on + strand at 947.715 kb on + strand at 947.715 kb on + strand at 947.716 kb on - strand at 947.716 kb on - strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.719 kb on + strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.720 kb on - strand at 947.760 kb on + strand at 947.818 kb on + strand at 947.827 kb on + strand at 947.827 kb on + strand at 947.827 kb on + strand at 947.827 kb on + strand at 947.827 kb on + strand at 947.827 kb on + strand at 947.827 kb on + strand at 947.828 kb on - strand at 947.828 kb on - strand at 947.828 kb on - strand at 947.828 kb on - strand at 947.828 kb on - strand at 947.828 kb on - strand at 947.924 kb on + strand at 947.924 kb on + strand at 947.924 kb on + strand at 947.924 kb on + strand at 947.924 kb on + strand at 947.924 kb on + strand at 947.924 kb on + strand at 947.925 kb on - strand at 947.925 kb on - strand at 947.925 kb on - strand at 947.933 kb on + strand at 947.933 kb on + strand at 947.933 kb on + strand at 947.933 kb on + strand at 947.933 kb on + strand at 947.934 kb on - strand at 947.934 kb on - strand at 947.934 kb on - strand at 947.934 kb on - strand at 947.964 kb on + strand at 947.964 kb on + strand at 947.964 kb on + strand at 947.965 kb on - strand at 947.980 kb on + strand at 947.980 kb on + strand at 947.980 kb on + strand at 947.980 kb on + strand at 947.980 kb on + strand at 947.980 kb on + strand at 947.981 kb on - strand at 947.981 kb on - strand at 947.983 kb on + strand at 948.042 kb on + strand at 948.042 kb on + strand at 948.042 kb on + strand at 948.042 kb on + strand at 948.042 kb on + strand at 948.042 kb on + strand at 948.043 kb on - strand at 948.043 kb on - strand at 948.043 kb on - strand at 948.043 kb on - strand at 948.043 kb on - strand at 948.043 kb on - strand at 948.043 kb on - strand at 948.043 kb on - strand at 948.043 kb on - strand at 948.043 kb on - strand at 948.043 kb on - strand at 948.043 kb on - strand at 948.043 kb on - strand at 948.098 kb on + strand, within PfGW456L13_839 at 948.110 kb on + strand, within PfGW456L13_839 at 948.174 kb on + strand, within PfGW456L13_839 at 948.174 kb on + strand, within PfGW456L13_839 at 948.174 kb on + strand, within PfGW456L13_839 at 948.174 kb on + strand, within PfGW456L13_839 at 948.174 kb on + strand, within PfGW456L13_839 at 948.175 kb on - strand, within PfGW456L13_839 at 948.175 kb on - strand, within PfGW456L13_839 at 948.219 kb on - strand, within PfGW456L13_839 at 948.275 kb on - strand, within PfGW456L13_839 at 948.397 kb on + strand, within PfGW456L13_839 at 948.397 kb on + strand, within PfGW456L13_839 at 948.532 kb on + strand at 948.532 kb on + strand at 948.532 kb on + strand at 948.533 kb on - strand at 948.533 kb on - strand at 948.533 kb on - strand at 948.534 kb on + strand at 948.534 kb on + strand at 948.534 kb on + strand at 948.534 kb on + strand at 948.534 kb on + strand at 948.534 kb on + strand at 948.534 kb on + strand at 948.535 kb on - strand at 948.535 kb on - strand at 948.535 kb on - strand at 948.535 kb on - strand at 948.535 kb on - strand at 948.535 kb on - strand at 948.538 kb on + strand at 948.538 kb on + strand at 948.538 kb on + strand at 948.538 kb on + strand at 948.538 kb on + strand at 948.538 kb on + strand at 948.539 kb on - strand at 948.539 kb on - strand at 948.564 kb on + strand at 948.564 kb on + strand at 948.564 kb on + strand at 948.565 kb on - strand at 948.565 kb on - strand at 948.565 kb on - strand at 948.565 kb on - strand at 948.607 kb on + strand, within PfGW456L13_840
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 945,742 - +0.5 945,742 - -0.3 945,742 - -0.1 945,742 - -0.1 945,742 - +0.4 945,755 + +0.6 945,755 + +0.8 945,755 + +1.0 945,755 + -0.3 945,755 + -0.1 945,755 + -0.1 945,755 + -0.3 945,755 + +0.1 945,755 + -0.3 945,755 + +0.3 945,755 + +0.3 945,756 - -0.0 945,756 - -0.1 945,756 - +0.2 945,756 - -0.1 945,756 - +1.2 945,756 - +0.5 945,757 + -0.1 945,757 + -0.4 945,757 + -0.0 945,757 + +0.3 945,758 - -0.3 945,824 - -1.3 945,831 - -0.8 945,920 + +0.9 946,454 + +0.1 946,454 + +0.3 946,454 + -0.8 946,455 - -2.7 946,491 + -0.8 946,491 + -0.4 946,492 - -2.0 946,492 - -0.8 946,492 - -0.9 946,492 - -2.2 946,538 + -1.1 946,538 + -1.1 946,666 + PfGW456L13_838 0.13 -1.6 946,666 + PfGW456L13_838 0.13 -2.1 946,666 + PfGW456L13_838 0.13 -1.1 946,666 + PfGW456L13_838 0.13 -0.9 946,666 + PfGW456L13_838 0.13 -1.3 946,666 + PfGW456L13_838 0.13 +0.5 946,667 - PfGW456L13_838 0.13 -1.6 946,756 + PfGW456L13_838 0.20 +0.0 946,756 + PfGW456L13_838 0.20 -1.7 946,756 + PfGW456L13_838 0.20 -1.9 946,756 + PfGW456L13_838 0.20 -2.1 946,756 + PfGW456L13_838 0.20 -2.4 946,756 + PfGW456L13_838 0.20 -0.6 946,757 - PfGW456L13_838 0.20 -1.4 946,757 - PfGW456L13_838 0.20 -1.5 946,757 - PfGW456L13_838 0.20 -2.1 946,757 - PfGW456L13_838 0.20 +0.0 946,757 - PfGW456L13_838 0.20 -1.1 946,757 - PfGW456L13_838 0.20 -1.3 946,757 - PfGW456L13_838 0.20 -1.5 946,757 - PfGW456L13_838 0.20 -1.4 946,762 + PfGW456L13_838 0.20 -1.1 946,762 + PfGW456L13_838 0.20 -1.6 946,762 + PfGW456L13_838 0.20 -2.4 946,762 + PfGW456L13_838 0.20 -1.2 947,007 + PfGW456L13_838 0.38 -1.1 947,007 + PfGW456L13_838 0.38 -0.7 947,026 + PfGW456L13_838 0.40 -1.7 947,026 + PfGW456L13_838 0.40 -0.3 947,026 + PfGW456L13_838 0.40 -1.1 947,026 + PfGW456L13_838 0.40 -1.3 947,026 + PfGW456L13_838 0.40 -1.2 947,026 + PfGW456L13_838 0.40 -0.9 947,027 - PfGW456L13_838 0.40 -0.8 947,027 - PfGW456L13_838 0.40 -0.3 947,027 - PfGW456L13_838 0.40 -1.3 947,027 - PfGW456L13_838 0.40 -1.7 947,132 + PfGW456L13_838 0.48 -2.1 947,133 - PfGW456L13_838 0.48 -0.9 947,133 - PfGW456L13_838 0.48 -1.3 947,133 - PfGW456L13_838 0.48 -2.1 947,133 - PfGW456L13_838 0.48 -2.7 947,212 + PfGW456L13_838 0.54 -3.1 947,213 - PfGW456L13_838 0.54 -1.9 947,383 - PfGW456L13_838 0.67 -0.6 947,471 + PfGW456L13_838 0.73 -0.4 947,471 + PfGW456L13_838 0.73 -2.9 947,701 + -2.4 947,701 + -0.9 947,701 + -4.0 947,701 + -1.3 947,701 + -1.6 947,701 + -2.1 947,701 + -1.2 947,701 + -1.5 947,701 + -1.2 947,702 - -0.6 947,702 - -0.6 947,702 - -2.0 947,702 - -1.8 947,702 - -1.3 947,715 + -2.2 947,715 + -2.3 947,715 + -1.0 947,715 + -1.9 947,715 + -2.3 947,716 - -2.0 947,716 - -0.7 947,719 + -0.6 947,719 + -1.5 947,719 + -2.9 947,719 + -2.0 947,719 + -1.1 947,719 + -1.3 947,719 + -2.2 947,719 + -1.8 947,719 + -1.6 947,719 + -2.3 947,719 + -1.2 947,719 + -1.0 947,719 + -2.9 947,719 + -0.9 947,719 + -0.8 947,719 + +0.2 947,719 + -2.9 947,719 + -2.2 947,719 + -0.9 947,719 + -1.8 947,719 + -2.6 947,719 + -1.6 947,719 + -1.6 947,719 + -0.2 947,719 + -3.1 947,719 + -1.5 947,719 + -2.7 947,719 + -2.5 947,719 + -2.8 947,719 + -1.6 947,719 + -1.9 947,719 + -1.8 947,719 + -1.4 947,719 + -1.7 947,719 + -0.2 947,719 + -1.9 947,719 + -2.4 947,719 + -2.0 947,719 + -0.4 947,719 + -2.6 947,719 + -3.2 947,720 - -0.9 947,720 - -1.5 947,720 - -1.1 947,720 - -1.4 947,720 - -1.0 947,720 - +0.1 947,720 - -1.2 947,720 - -2.1 947,720 - -0.3 947,720 - -3.0 947,720 - +0.0 947,720 - -1.2 947,720 - -1.7 947,720 - -1.4 947,720 - -2.5 947,720 - -3.4 947,720 - -2.0 947,720 - +0.1 947,720 - -1.6 947,720 - -0.8 947,720 - -1.3 947,720 - -0.1 947,720 - -0.4 947,720 - -2.8 947,720 - -0.9 947,720 - -0.0 947,720 - -1.9 947,720 - -1.3 947,720 - -3.2 947,720 - -1.5 947,720 - -1.6 947,720 - -0.4 947,720 - -1.0 947,720 - -1.6 947,720 - -2.4 947,720 - -1.1 947,720 - -0.7 947,720 - -2.6 947,720 - -1.3 947,720 - -1.5 947,720 - -1.6 947,760 + -0.8 947,818 + -2.2 947,827 + -0.7 947,827 + -1.6 947,827 + -0.3 947,827 + -1.8 947,827 + +0.4 947,827 + -0.9 947,827 + -0.6 947,828 - +0.9 947,828 - -1.2 947,828 - -0.2 947,828 - -1.4 947,828 - -2.0 947,828 - -1.2 947,924 + +0.1 947,924 + -1.3 947,924 + -0.7 947,924 + +0.5 947,924 + -1.3 947,924 + -2.6 947,924 + +0.4 947,925 - -0.7 947,925 - -0.5 947,925 - +0.0 947,933 + -1.8 947,933 + -0.1 947,933 + -1.3 947,933 + -1.0 947,933 + +0.3 947,934 - +0.4 947,934 - -0.1 947,934 - -0.6 947,934 - -0.5 947,964 + -0.4 947,964 + +0.7 947,964 + -0.8 947,965 - -0.2 947,980 + +0.7 947,980 + -0.3 947,980 + +0.7 947,980 + -0.7 947,980 + -0.5 947,980 + -0.7 947,981 - -0.0 947,981 - -0.7 947,983 + +0.5 948,042 + -0.2 948,042 + -1.2 948,042 + -2.4 948,042 + -1.0 948,042 + +0.1 948,042 + -0.1 948,043 - -0.5 948,043 - +0.8 948,043 - -0.4 948,043 - -1.0 948,043 - -1.1 948,043 - +1.2 948,043 - +0.0 948,043 - +0.0 948,043 - -1.3 948,043 - +2.6 948,043 - +0.1 948,043 - -0.7 948,043 - +0.2 948,098 + PfGW456L13_839 0.13 -0.1 948,110 + PfGW456L13_839 0.16 -0.0 948,174 + PfGW456L13_839 0.31 -1.1 948,174 + PfGW456L13_839 0.31 -0.1 948,174 + PfGW456L13_839 0.31 -0.0 948,174 + PfGW456L13_839 0.31 -0.6 948,174 + PfGW456L13_839 0.31 -0.5 948,175 - PfGW456L13_839 0.31 +0.9 948,175 - PfGW456L13_839 0.31 +2.0 948,219 - PfGW456L13_839 0.41 -0.4 948,275 - PfGW456L13_839 0.54 +0.3 948,397 + PfGW456L13_839 0.83 -1.2 948,397 + PfGW456L13_839 0.83 -1.2 948,532 + -1.8 948,532 + -1.4 948,532 + -1.2 948,533 - +1.0 948,533 - +0.7 948,533 - +0.7 948,534 + +0.5 948,534 + -2.7 948,534 + -1.7 948,534 + -1.0 948,534 + -1.1 948,534 + -1.3 948,534 + -0.5 948,535 - +0.9 948,535 - +0.7 948,535 - +0.3 948,535 - +1.5 948,535 - -1.1 948,535 - +1.5 948,538 + -0.6 948,538 + -0.7 948,538 + -1.7 948,538 + -1.6 948,538 + -2.6 948,538 + -1.1 948,539 - +2.1 948,539 - +0.7 948,564 + +0.6 948,564 + +1.2 948,564 + +2.0 948,565 - -1.8 948,565 - -0.1 948,565 - +3.3 948,565 - +2.4 948,607 + PfGW456L13_840 0.11 +0.3
Or see this region's nucleotide sequence