Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_161

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_160 and PfGW456L13_161 overlap by 19 nucleotidesPfGW456L13_161 and PfGW456L13_162 are separated by 194 nucleotidesPfGW456L13_162 and PfGW456L13_163 are separated by 107 nucleotides PfGW456L13_160 - Epoxyqueuosine (oQ) reductase QueG, at 185,293 to 186,372 _160 PfGW456L13_161 - putative transporter, required for glycine utilization (from data), at 186,354 to 186,965 _161 PfGW456L13_162 - 3'-to-5' oligoribonuclease (orn), at 187,160 to 187,702 _162 PfGW456L13_163 - Ribosome small subunit-stimulated GTPase EngC, at 187,810 to 188,841 _163 Position (kb) 186 187Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 185.455 kb on + strand, within PfGW456L13_160at 185.455 kb on + strand, within PfGW456L13_160at 185.455 kb on + strand, within PfGW456L13_160at 185.455 kb on + strand, within PfGW456L13_160at 185.455 kb on + strand, within PfGW456L13_160at 185.455 kb on + strand, within PfGW456L13_160at 185.455 kb on + strand, within PfGW456L13_160at 185.456 kb on - strand, within PfGW456L13_160at 185.456 kb on - strand, within PfGW456L13_160at 185.456 kb on - strand, within PfGW456L13_160at 185.456 kb on - strand, within PfGW456L13_160at 185.456 kb on - strand, within PfGW456L13_160at 185.456 kb on - strand, within PfGW456L13_160at 185.456 kb on - strand, within PfGW456L13_160at 185.456 kb on - strand, within PfGW456L13_160at 185.539 kb on + strand, within PfGW456L13_160at 185.539 kb on + strand, within PfGW456L13_160at 185.539 kb on + strand, within PfGW456L13_160at 185.539 kb on + strand, within PfGW456L13_160at 185.539 kb on + strand, within PfGW456L13_160at 185.540 kb on - strand, within PfGW456L13_160at 185.540 kb on - strand, within PfGW456L13_160at 185.593 kb on + strand, within PfGW456L13_160at 185.594 kb on - strand, within PfGW456L13_160at 185.623 kb on + strand, within PfGW456L13_160at 185.624 kb on - strand, within PfGW456L13_160at 185.775 kb on + strand, within PfGW456L13_160at 185.775 kb on + strand, within PfGW456L13_160at 185.776 kb on - strand, within PfGW456L13_160at 185.933 kb on - strand, within PfGW456L13_160at 185.933 kb on - strand, within PfGW456L13_160at 185.963 kb on - strand, within PfGW456L13_160at 186.311 kb on + strandat 186.311 kb on + strandat 186.311 kb on + strandat 186.312 kb on - strandat 186.370 kb on + strandat 186.370 kb on + strandat 186.370 kb on + strandat 186.371 kb on - strandat 186.371 kb on - strandat 186.465 kb on + strand, within PfGW456L13_161at 186.475 kb on + strand, within PfGW456L13_161at 186.475 kb on + strand, within PfGW456L13_161at 186.476 kb on - strand, within PfGW456L13_161at 186.476 kb on - strand, within PfGW456L13_161at 186.476 kb on - strand, within PfGW456L13_161at 186.476 kb on - strand, within PfGW456L13_161at 186.476 kb on - strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.490 kb on + strand, within PfGW456L13_161at 186.491 kb on - strand, within PfGW456L13_161at 186.491 kb on - strand, within PfGW456L13_161at 186.491 kb on - strand, within PfGW456L13_161at 186.491 kb on - strand, within PfGW456L13_161at 186.491 kb on - strand, within PfGW456L13_161at 186.491 kb on - strand, within PfGW456L13_161at 186.491 kb on - strand, within PfGW456L13_161at 186.491 kb on - strand, within PfGW456L13_161at 186.491 kb on - strand, within PfGW456L13_161at 186.524 kb on - strand, within PfGW456L13_161at 186.524 kb on - strand, within PfGW456L13_161at 186.552 kb on - strand, within PfGW456L13_161at 186.737 kb on + strand, within PfGW456L13_161at 186.738 kb on - strand, within PfGW456L13_161at 186.779 kb on - strand, within PfGW456L13_161at 186.949 kb on + strandat 186.966 kb on - strandat 186.997 kb on + strandat 186.998 kb on - strandat 186.998 kb on - strandat 187.051 kb on + strandat 187.051 kb on + strandat 187.051 kb on + strandat 187.051 kb on + strandat 187.051 kb on + strandat 187.051 kb on + strandat 187.051 kb on + strandat 187.051 kb on + strandat 187.051 kb on + strandat 187.051 kb on + strandat 187.051 kb on + strandat 187.051 kb on + strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.052 kb on - strandat 187.733 kb on + strandat 187.760 kb on - strandat 187.760 kb on - strandat 187.776 kb on + strandat 187.776 kb on + strandat 187.776 kb on + strandat 187.777 kb on - strandat 187.777 kb on - strandat 187.780 kb on + strandat 187.780 kb on + strandat 187.780 kb on + strandat 187.781 kb on - strandat 187.781 kb on - strandat 187.781 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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185,455 + PfGW456L13_160 0.15 +0.2
185,455 + PfGW456L13_160 0.15 +0.3
185,455 + PfGW456L13_160 0.15 -0.8
185,455 + PfGW456L13_160 0.15 +0.7
185,455 + PfGW456L13_160 0.15 -0.6
185,455 + PfGW456L13_160 0.15 +0.1
185,455 + PfGW456L13_160 0.15 -0.7
185,456 - PfGW456L13_160 0.15 -1.4
185,456 - PfGW456L13_160 0.15 -0.1
185,456 - PfGW456L13_160 0.15 +0.5
185,456 - PfGW456L13_160 0.15 +0.5
185,456 - PfGW456L13_160 0.15 -2.0
185,456 - PfGW456L13_160 0.15 -0.2
185,456 - PfGW456L13_160 0.15 -0.9
185,456 - PfGW456L13_160 0.15 -0.5
185,539 + PfGW456L13_160 0.23 +0.3
185,539 + PfGW456L13_160 0.23 +1.6
185,539 + PfGW456L13_160 0.23 +1.5
185,539 + PfGW456L13_160 0.23 -1.5
185,539 + PfGW456L13_160 0.23 -1.3
185,540 - PfGW456L13_160 0.23 +0.4
185,540 - PfGW456L13_160 0.23 -0.5
185,593 + PfGW456L13_160 0.28 -1.3
185,594 - PfGW456L13_160 0.28 +0.3
185,623 + PfGW456L13_160 0.31 -1.4
185,624 - PfGW456L13_160 0.31 -0.8
185,775 + PfGW456L13_160 0.45 -1.1
185,775 + PfGW456L13_160 0.45 -0.1
185,776 - PfGW456L13_160 0.45 -0.1
185,933 - PfGW456L13_160 0.59 +0.2
185,933 - PfGW456L13_160 0.59 -0.9
185,963 - PfGW456L13_160 0.62 -2.2
186,311 + -3.3
186,311 + -1.1
186,311 + -0.2
186,312 - +0.5
186,370 + -3.1
186,370 + -1.6
186,370 + -4.5
186,371 - -4.2
186,371 - -1.6
186,465 + PfGW456L13_161 0.18 -3.6
186,475 + PfGW456L13_161 0.20 -1.8
186,475 + PfGW456L13_161 0.20 -3.8
186,476 - PfGW456L13_161 0.20 -4.7
186,476 - PfGW456L13_161 0.20 -2.0
186,476 - PfGW456L13_161 0.20 -4.2
186,476 - PfGW456L13_161 0.20 -4.3
186,476 - PfGW456L13_161 0.20 -2.7
186,490 + PfGW456L13_161 0.22 -2.2
186,490 + PfGW456L13_161 0.22 -3.8
186,490 + PfGW456L13_161 0.22 -1.2
186,490 + PfGW456L13_161 0.22 -4.4
186,490 + PfGW456L13_161 0.22 -3.4
186,490 + PfGW456L13_161 0.22 -3.1
186,490 + PfGW456L13_161 0.22 -2.1
186,490 + PfGW456L13_161 0.22 -4.1
186,490 + PfGW456L13_161 0.22 -3.9
186,490 + PfGW456L13_161 0.22 -3.7
186,490 + PfGW456L13_161 0.22 -4.1
186,490 + PfGW456L13_161 0.22 -4.0
186,490 + PfGW456L13_161 0.22 -3.9
186,491 - PfGW456L13_161 0.22 -2.6
186,491 - PfGW456L13_161 0.22 -0.4
186,491 - PfGW456L13_161 0.22 -3.5
186,491 - PfGW456L13_161 0.22 -4.6
186,491 - PfGW456L13_161 0.22 -4.0
186,491 - PfGW456L13_161 0.22 -3.2
186,491 - PfGW456L13_161 0.22 -3.7
186,491 - PfGW456L13_161 0.22 -3.8
186,491 - PfGW456L13_161 0.22 -3.5
186,524 - PfGW456L13_161 0.28 -3.6
186,524 - PfGW456L13_161 0.28 -2.2
186,552 - PfGW456L13_161 0.32 -2.3
186,737 + PfGW456L13_161 0.63 -3.0
186,738 - PfGW456L13_161 0.63 -3.2
186,779 - PfGW456L13_161 0.69 -2.8
186,949 + -1.3
186,966 - -2.9
186,997 + -2.1
186,998 - -1.2
186,998 - -3.1
187,051 + -0.1
187,051 + +0.4
187,051 + +0.1
187,051 + +0.2
187,051 + +0.3
187,051 + -0.1
187,051 + +0.6
187,051 + -0.6
187,051 + -2.2
187,051 + -0.3
187,051 + +0.3
187,051 + -0.3
187,052 - -0.6
187,052 - -1.6
187,052 - -1.6
187,052 - -2.5
187,052 - -1.5
187,052 - -1.8
187,052 - -1.9
187,052 - -2.4
187,052 - -4.1
187,052 - -1.8
187,052 - -0.7
187,052 - -1.2
187,052 - -2.2
187,052 - -0.2
187,052 - -2.7
187,052 - +1.6
187,733 + +0.4
187,760 - +0.2
187,760 - -0.3
187,776 + +0.2
187,776 + -0.8
187,776 + +0.3
187,777 - +0.2
187,777 - -0.2
187,780 + +0.1
187,780 + -0.4
187,780 + +0.5
187,781 - -1.0
187,781 - +0.0
187,781 - -0.0

Or see this region's nucleotide sequence