Strain Fitness in Pseudomonas sp. RS175 around PFR28_04568

Experiment: caffeic (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04566 and PFR28_04567 are separated by 82 nucleotidesPFR28_04567 and PFR28_04568 are separated by 58 nucleotidesPFR28_04568 and PFR28_04569 are separated by 328 nucleotides PFR28_04566: PFR28_04566 - 4-chloro-allylglycine synthase, at 5,216,177 to 5,216,923 _04566 PFR28_04567: PFR28_04567 - hypothetical protein, at 5,217,006 to 5,217,800 _04567 PFR28_04568: PFR28_04568 - Na(+)/H(+)-K(+) antiporter GerN, at 5,217,859 to 5,219,085 _04568 PFR28_04569: PFR28_04569 - HTH-type transcriptional regulator CdhR, at 5,219,414 to 5,220,409 _04569 Position (kb) 5217 5218 5219 5220Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 5217.178 kb on + strand, within PFR28_04567at 5217.178 kb on + strand, within PFR28_04567at 5217.178 kb on + strand, within PFR28_04567at 5217.178 kb on + strand, within PFR28_04567at 5217.179 kb on - strand, within PFR28_04567at 5217.179 kb on - strand, within PFR28_04567at 5217.179 kb on - strand, within PFR28_04567at 5217.179 kb on - strand, within PFR28_04567at 5217.202 kb on + strand, within PFR28_04567at 5217.202 kb on + strand, within PFR28_04567at 5217.202 kb on + strand, within PFR28_04567at 5217.203 kb on - strand, within PFR28_04567at 5217.229 kb on + strand, within PFR28_04567at 5217.229 kb on + strand, within PFR28_04567at 5217.230 kb on - strand, within PFR28_04567at 5217.230 kb on - strand, within PFR28_04567at 5217.230 kb on - strand, within PFR28_04567at 5217.230 kb on - strand, within PFR28_04567at 5217.337 kb on + strand, within PFR28_04567at 5217.337 kb on + strand, within PFR28_04567at 5217.337 kb on + strand, within PFR28_04567at 5217.337 kb on + strand, within PFR28_04567at 5217.337 kb on + strand, within PFR28_04567at 5217.338 kb on - strand, within PFR28_04567at 5217.338 kb on - strand, within PFR28_04567at 5217.338 kb on - strand, within PFR28_04567at 5217.338 kb on - strand, within PFR28_04567at 5217.338 kb on - strand, within PFR28_04567at 5217.343 kb on + strand, within PFR28_04567at 5217.400 kb on + strand, within PFR28_04567at 5217.478 kb on + strand, within PFR28_04567at 5217.478 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.494 kb on - strand, within PFR28_04567at 5217.494 kb on - strand, within PFR28_04567at 5217.494 kb on - strand, within PFR28_04567at 5217.494 kb on - strand, within PFR28_04567at 5217.494 kb on - strand, within PFR28_04567at 5217.530 kb on + strand, within PFR28_04567at 5217.531 kb on - strand, within PFR28_04567at 5217.531 kb on - strand, within PFR28_04567at 5217.531 kb on - strand, within PFR28_04567at 5217.531 kb on - strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.545 kb on - strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.673 kb on + strand, within PFR28_04567at 5217.696 kb on - strand, within PFR28_04567at 5217.765 kb on + strandat 5217.765 kb on + strandat 5217.766 kb on - strandat 5217.802 kb on + strandat 5217.802 kb on + strandat 5217.802 kb on + strandat 5217.803 kb on - strandat 5217.835 kb on - strandat 5218.141 kb on + strand, within PFR28_04568at 5218.141 kb on + strand, within PFR28_04568at 5218.142 kb on - strand, within PFR28_04568at 5218.142 kb on - strand, within PFR28_04568at 5218.294 kb on + strand, within PFR28_04568at 5218.295 kb on - strand, within PFR28_04568at 5218.355 kb on + strand, within PFR28_04568at 5218.356 kb on - strand, within PFR28_04568at 5218.356 kb on - strand, within PFR28_04568at 5218.512 kb on + strand, within PFR28_04568at 5218.512 kb on + strand, within PFR28_04568at 5218.512 kb on + strand, within PFR28_04568at 5218.513 kb on - strand, within PFR28_04568at 5218.513 kb on - strand, within PFR28_04568at 5218.513 kb on - strand, within PFR28_04568at 5218.513 kb on - strand, within PFR28_04568at 5218.735 kb on + strand, within PFR28_04568at 5218.736 kb on - strand, within PFR28_04568at 5218.870 kb on + strand, within PFR28_04568at 5218.870 kb on + strand, within PFR28_04568at 5218.870 kb on + strand, within PFR28_04568at 5218.870 kb on + strand, within PFR28_04568at 5218.870 kb on + strand, within PFR28_04568at 5218.870 kb on + strand, within PFR28_04568at 5218.871 kb on - strand, within PFR28_04568at 5218.871 kb on - strand, within PFR28_04568at 5218.871 kb on - strand, within PFR28_04568at 5218.871 kb on - strand, within PFR28_04568at 5218.891 kb on + strand, within PFR28_04568at 5218.892 kb on - strand, within PFR28_04568at 5218.892 kb on - strand, within PFR28_04568at 5218.892 kb on - strand, within PFR28_04568at 5218.924 kb on + strand, within PFR28_04568at 5218.924 kb on + strand, within PFR28_04568at 5218.925 kb on - strand, within PFR28_04568at 5218.925 kb on - strand, within PFR28_04568at 5218.925 kb on - strand, within PFR28_04568at 5218.925 kb on - strand, within PFR28_04568at 5218.925 kb on - strand, within PFR28_04568at 5218.960 kb on + strand, within PFR28_04568at 5218.976 kb on - strandat 5219.029 kb on + strandat 5219.085 kb on + strandat 5219.086 kb on - strandat 5219.086 kb on - strandat 5219.086 kb on - strandat 5219.121 kb on + strandat 5219.121 kb on + strandat 5219.121 kb on + strandat 5219.122 kb on - strandat 5219.224 kb on + strandat 5219.226 kb on + strandat 5219.226 kb on + strandat 5219.237 kb on + strandat 5219.238 kb on - strandat 5219.306 kb on + strandat 5219.306 kb on + strandat 5219.306 kb on + strandat 5219.306 kb on + strandat 5219.306 kb on + strandat 5219.306 kb on + strandat 5219.306 kb on + strandat 5219.306 kb on + strandat 5219.307 kb on - strandat 5219.307 kb on - strandat 5219.307 kb on - strandat 5219.307 kb on - strandat 5219.307 kb on - strandat 5219.307 kb on - strandat 5219.352 kb on + strandat 5219.373 kb on + strandat 5219.373 kb on + strandat 5219.393 kb on + strandat 5219.393 kb on + strandat 5219.393 kb on + strandat 5219.407 kb on - strandat 5219.450 kb on + strandat 5219.450 kb on + strandat 5219.450 kb on + strandat 5219.451 kb on - strandat 5219.451 kb on - strandat 5219.493 kb on + strandat 5219.531 kb on + strand, within PFR28_04569at 5219.532 kb on - strand, within PFR28_04569at 5219.864 kb on + strand, within PFR28_04569at 5219.864 kb on + strand, within PFR28_04569at 5219.864 kb on + strand, within PFR28_04569at 5219.864 kb on + strand, within PFR28_04569at 5219.864 kb on + strand, within PFR28_04569at 5219.864 kb on + strand, within PFR28_04569at 5219.864 kb on + strand, within PFR28_04569at 5219.864 kb on + strand, within PFR28_04569at 5219.864 kb on + strand, within PFR28_04569at 5219.864 kb on + strand, within PFR28_04569at 5219.864 kb on + strand, within PFR28_04569at 5219.865 kb on - strand, within PFR28_04569at 5219.865 kb on - strand, within PFR28_04569at 5219.865 kb on - strand, within PFR28_04569at 5219.865 kb on - strand, within PFR28_04569at 5219.865 kb on - strand, within PFR28_04569at 5219.865 kb on - strand, within PFR28_04569at 5219.865 kb on - strand, within PFR28_04569at 5219.865 kb on - strand, within PFR28_04569at 5220.036 kb on + strand, within PFR28_04569at 5220.037 kb on - strand, within PFR28_04569at 5220.037 kb on - strand, within PFR28_04569at 5220.037 kb on - strand, within PFR28_04569

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Per-strain Table

Position Strand Gene LocusTag Fraction caffeic (C) 2.5 mM
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5,217,178 + PFR28_04567 0.22 -3.1
5,217,178 + PFR28_04567 0.22 -1.9
5,217,178 + PFR28_04567 0.22 -3.3
5,217,178 + PFR28_04567 0.22 -3.4
5,217,179 - PFR28_04567 0.22 -2.4
5,217,179 - PFR28_04567 0.22 -0.5
5,217,179 - PFR28_04567 0.22 +0.0
5,217,179 - PFR28_04567 0.22 -0.7
5,217,202 + PFR28_04567 0.25 -1.0
5,217,202 + PFR28_04567 0.25 -3.2
5,217,202 + PFR28_04567 0.25 -0.8
5,217,203 - PFR28_04567 0.25 -0.6
5,217,229 + PFR28_04567 0.28 -1.9
5,217,229 + PFR28_04567 0.28 -3.1
5,217,230 - PFR28_04567 0.28 -0.3
5,217,230 - PFR28_04567 0.28 -2.1
5,217,230 - PFR28_04567 0.28 -0.8
5,217,230 - PFR28_04567 0.28 -0.0
5,217,337 + PFR28_04567 0.42 -0.9
5,217,337 + PFR28_04567 0.42 -1.7
5,217,337 + PFR28_04567 0.42 -2.8
5,217,337 + PFR28_04567 0.42 -2.5
5,217,337 + PFR28_04567 0.42 -0.8
5,217,338 - PFR28_04567 0.42 -1.4
5,217,338 - PFR28_04567 0.42 +1.5
5,217,338 - PFR28_04567 0.42 -2.5
5,217,338 - PFR28_04567 0.42 -1.8
5,217,338 - PFR28_04567 0.42 +0.5
5,217,343 + PFR28_04567 0.42 -2.4
5,217,400 + PFR28_04567 0.50 -3.4
5,217,478 + PFR28_04567 0.59 -4.3
5,217,478 + PFR28_04567 0.59 -3.3
5,217,493 + PFR28_04567 0.61 -0.0
5,217,493 + PFR28_04567 0.61 -1.7
5,217,493 + PFR28_04567 0.61 -3.2
5,217,493 + PFR28_04567 0.61 -4.4
5,217,493 + PFR28_04567 0.61 -1.0
5,217,493 + PFR28_04567 0.61 -3.5
5,217,493 + PFR28_04567 0.61 -1.0
5,217,494 - PFR28_04567 0.61 -2.8
5,217,494 - PFR28_04567 0.61 +0.5
5,217,494 - PFR28_04567 0.61 -2.8
5,217,494 - PFR28_04567 0.61 -1.5
5,217,494 - PFR28_04567 0.61 -2.3
5,217,530 + PFR28_04567 0.66 -2.3
5,217,531 - PFR28_04567 0.66 -2.4
5,217,531 - PFR28_04567 0.66 -2.4
5,217,531 - PFR28_04567 0.66 -1.0
5,217,531 - PFR28_04567 0.66 -0.5
5,217,532 + PFR28_04567 0.66 -2.0
5,217,532 + PFR28_04567 0.66 -1.9
5,217,532 + PFR28_04567 0.66 -1.0
5,217,532 + PFR28_04567 0.66 +0.1
5,217,532 + PFR28_04567 0.66 -1.7
5,217,532 + PFR28_04567 0.66 -2.2
5,217,532 + PFR28_04567 0.66 -2.4
5,217,532 + PFR28_04567 0.66 -2.8
5,217,532 + PFR28_04567 0.66 +0.5
5,217,532 + PFR28_04567 0.66 -2.4
5,217,532 + PFR28_04567 0.66 -3.0
5,217,532 + PFR28_04567 0.66 -1.5
5,217,532 + PFR28_04567 0.66 -2.4
5,217,532 + PFR28_04567 0.66 -4.1
5,217,532 + PFR28_04567 0.66 -2.0
5,217,533 - PFR28_04567 0.66 -2.8
5,217,533 - PFR28_04567 0.66 -1.6
5,217,533 - PFR28_04567 0.66 -4.5
5,217,533 - PFR28_04567 0.66 -1.4
5,217,533 - PFR28_04567 0.66 -2.8
5,217,533 - PFR28_04567 0.66 -2.0
5,217,533 - PFR28_04567 0.66 -1.0
5,217,533 - PFR28_04567 0.66 -1.2
5,217,533 - PFR28_04567 0.66 -1.8
5,217,533 - PFR28_04567 0.66 -2.5
5,217,533 - PFR28_04567 0.66 -3.7
5,217,533 - PFR28_04567 0.66 -3.7
5,217,533 - PFR28_04567 0.66 -2.9
5,217,533 - PFR28_04567 0.66 -3.6
5,217,545 - PFR28_04567 0.68 -3.3
5,217,548 + PFR28_04567 0.68 -3.5
5,217,548 + PFR28_04567 0.68 -0.6
5,217,548 + PFR28_04567 0.68 -0.0
5,217,548 + PFR28_04567 0.68 -2.9
5,217,548 + PFR28_04567 0.68 -2.0
5,217,548 + PFR28_04567 0.68 -4.0
5,217,548 + PFR28_04567 0.68 -2.3
5,217,548 + PFR28_04567 0.68 -4.9
5,217,548 + PFR28_04567 0.68 -1.1
5,217,548 + PFR28_04567 0.68 -4.3
5,217,548 + PFR28_04567 0.68 -2.2
5,217,548 + PFR28_04567 0.68 -2.6
5,217,549 - PFR28_04567 0.68 +3.1
5,217,549 - PFR28_04567 0.68 -1.7
5,217,549 - PFR28_04567 0.68 -0.1
5,217,549 - PFR28_04567 0.68 -2.8
5,217,549 - PFR28_04567 0.68 -2.3
5,217,549 - PFR28_04567 0.68 -1.4
5,217,549 - PFR28_04567 0.68 +0.3
5,217,549 - PFR28_04567 0.68 -2.2
5,217,549 - PFR28_04567 0.68 +0.1
5,217,549 - PFR28_04567 0.68 -1.0
5,217,549 - PFR28_04567 0.68 +0.5
5,217,673 + PFR28_04567 0.84 -1.0
5,217,696 - PFR28_04567 0.87 -2.6
5,217,765 + -1.9
5,217,765 + -1.5
5,217,766 - -0.3
5,217,802 + -2.6
5,217,802 + -0.8
5,217,802 + -2.7
5,217,803 - -4.1
5,217,835 - +0.0
5,218,141 + PFR28_04568 0.23 -2.5
5,218,141 + PFR28_04568 0.23 -0.1
5,218,142 - PFR28_04568 0.23 -0.3
5,218,142 - PFR28_04568 0.23 -0.2
5,218,294 + PFR28_04568 0.35 -0.8
5,218,295 - PFR28_04568 0.36 +3.5
5,218,355 + PFR28_04568 0.40 -2.7
5,218,356 - PFR28_04568 0.41 +2.5
5,218,356 - PFR28_04568 0.41 -0.1
5,218,512 + PFR28_04568 0.53 -3.2
5,218,512 + PFR28_04568 0.53 -2.9
5,218,512 + PFR28_04568 0.53 -0.7
5,218,513 - PFR28_04568 0.53 -1.5
5,218,513 - PFR28_04568 0.53 +0.7
5,218,513 - PFR28_04568 0.53 +0.5
5,218,513 - PFR28_04568 0.53 -0.1
5,218,735 + PFR28_04568 0.71 -3.1
5,218,736 - PFR28_04568 0.71 +1.2
5,218,870 + PFR28_04568 0.82 -3.2
5,218,870 + PFR28_04568 0.82 -2.5
5,218,870 + PFR28_04568 0.82 -0.0
5,218,870 + PFR28_04568 0.82 -3.2
5,218,870 + PFR28_04568 0.82 -2.2
5,218,870 + PFR28_04568 0.82 -1.4
5,218,871 - PFR28_04568 0.82 -1.5
5,218,871 - PFR28_04568 0.82 -1.4
5,218,871 - PFR28_04568 0.82 +0.3
5,218,871 - PFR28_04568 0.82 -1.9
5,218,891 + PFR28_04568 0.84 -1.3
5,218,892 - PFR28_04568 0.84 -0.2
5,218,892 - PFR28_04568 0.84 -1.1
5,218,892 - PFR28_04568 0.84 -2.0
5,218,924 + PFR28_04568 0.87 -3.0
5,218,924 + PFR28_04568 0.87 -2.9
5,218,925 - PFR28_04568 0.87 -0.1
5,218,925 - PFR28_04568 0.87 -0.6
5,218,925 - PFR28_04568 0.87 -1.5
5,218,925 - PFR28_04568 0.87 -2.3
5,218,925 - PFR28_04568 0.87 -0.1
5,218,960 + PFR28_04568 0.90 -1.8
5,218,976 - +0.0
5,219,029 + -2.7
5,219,085 + +0.3
5,219,086 - -2.9
5,219,086 - -2.7
5,219,086 - -3.5
5,219,121 + -1.6
5,219,121 + -4.6
5,219,121 + -3.2
5,219,122 - -1.5
5,219,224 + -2.4
5,219,226 + -4.8
5,219,226 + -4.3
5,219,237 + -4.2
5,219,238 - -1.0
5,219,306 + -1.8
5,219,306 + -4.1
5,219,306 + -5.5
5,219,306 + -2.5
5,219,306 + -3.9
5,219,306 + -3.9
5,219,306 + -2.8
5,219,306 + -3.1
5,219,307 - -2.3
5,219,307 - -1.1
5,219,307 - -2.1
5,219,307 - -1.0
5,219,307 - -1.8
5,219,307 - -0.9
5,219,352 + -2.4
5,219,373 + -1.0
5,219,373 + -3.8
5,219,393 + -1.8
5,219,393 + -2.0
5,219,393 + -2.7
5,219,407 - +0.2
5,219,450 + -1.6
5,219,450 + -2.9
5,219,450 + -2.1
5,219,451 - -3.2
5,219,451 - -0.6
5,219,493 + -2.8
5,219,531 + PFR28_04569 0.12 -2.3
5,219,532 - PFR28_04569 0.12 -2.0
5,219,864 + PFR28_04569 0.45 -3.0
5,219,864 + PFR28_04569 0.45 -1.8
5,219,864 + PFR28_04569 0.45 -3.0
5,219,864 + PFR28_04569 0.45 +1.5
5,219,864 + PFR28_04569 0.45 -4.7
5,219,864 + PFR28_04569 0.45 -2.1
5,219,864 + PFR28_04569 0.45 -2.5
5,219,864 + PFR28_04569 0.45 -1.5
5,219,864 + PFR28_04569 0.45 -3.6
5,219,864 + PFR28_04569 0.45 -1.8
5,219,864 + PFR28_04569 0.45 -1.5
5,219,865 - PFR28_04569 0.45 -1.8
5,219,865 - PFR28_04569 0.45 -1.1
5,219,865 - PFR28_04569 0.45 -1.2
5,219,865 - PFR28_04569 0.45 -2.4
5,219,865 - PFR28_04569 0.45 -3.7
5,219,865 - PFR28_04569 0.45 -2.8
5,219,865 - PFR28_04569 0.45 -1.6
5,219,865 - PFR28_04569 0.45 -4.1
5,220,036 + PFR28_04569 0.62 -3.1
5,220,037 - PFR28_04569 0.63 -1.3
5,220,037 - PFR28_04569 0.63 -2.6
5,220,037 - PFR28_04569 0.63 -2.5

Or see this region's nucleotide sequence